A segmentation algorithm for noisy images: Design and evaluation. - Ying Xu 001; Victor Olman; Edward C. Uberbacher (Pattern Recognit. Lett., 1998)

Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. - Ying Xu 001; Victor Olman; Dong Xu 002 (Bioinform., 2002)

Automated assignment of backbone NMR peaks using constrained bipartite matching. - Ying Xu 001; Dong Xu 002; Dongsup Kim; Victor Olman; Jane Razumovskaya; Tao Jiang 001 (Comput. Sci. Eng., 2002)

A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. - Jane Razumovskaya; Victor Olman; Dong Xu 002; Edward C. Uberbacher; Nathan Verberkmoes; Ying Xu 001 (CSB, 2003)

Computational Inference of Regulatory Pathways in Microbes. - Zhengchang Su; PhuongAn Dam; Xin Chen 037; Victor Olman; Tao Jiang 001; Brian Palenik; Ying Xu 001 (CSB, 2003)

Identification of Regulatory Binding Sites Using Minimum Spanning Trees. - Victor Olman; Dong Xu 002; Ying Xu 001 (Pacific Symposium on Biocomputing, 2003)

Cubic: Identification of Regulatory Binding Sites through Data Clustering. - Victor Olman; Dong Xu 002; Ying Xu 001 (J. Bioinform. Comput. Biol., 2003)

Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. - Zhengchang Su; PhuongAn Dam; Victor Olman; Ying Xu 001 (BIBE, 2004)

In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. - PhuongAn Dam; Zhengchang Su; Victor Olman; Ying Xu 001 (CSB, 2004)

Pathway Mapping with Operon Information: An Integer-Programming Method. - Fenglou Mao; Zhengchang Su; Victor Olman; David Chuang; Ying Xu 001 (CSB, 2004)

CUBIC: Search for Binding Sites. - Victor Olman; Jizhu Lu; PhuongAn Dam; Zhengchang Su; Ying Xu 001 (CSB, 2004)

Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. - Victor Olman; Hanchuan Peng; Zhengchang Su; Ying Xu 001 (CSB, 2004)

Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. - Zhengchang Su; PhuongAn Dam; X. Chen; Victor Olman; Tao Jiang 001; Ying Xu 001 (CSB, 2004)

Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. - Bo Yan; Chongle Pan; Victor Olman; Robert L. Hettich; Ying Xu 001 (CSB, 2004)

Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. - Youxing Qu; Jun-tao Guo; Victor Olman; Ying Xu 001 (Pacific Symposium on Biocomputing, 2004)

Computational Reconstruction of the carbon fixation pathway in Synechococcus SP. Wh 8102. - PhuongAn Dam; Zhengchang Su; Victor Olman; Ying Xu 001 (Advances in Bioinformatics and Its Applications, 2005)

Improving Operon Prediction in E. coli. - PhuongAn Dam; Victor Olman; Ying Xu 001 (CSB Workshops, 2005)

PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. - Guojun Li; Jizhu Lu; Victor Olman; Ying Xu 001 (CSB Workshops, 2005)

Accurate Prediction of Orthologous Gene Groups in Microbes. - Hongwei Wu; Fenglou Mao; Victor Olman; Ying Xu 001 (CSB, 2005)

A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. - Bo Yan; Chongle Pan; Victor Olman; Robert L. Hettich; Ying Xu 001 (Bioinform., 2005)

PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. - Bo Yan; Youxing Qu; Fenglou Mao; Victor Olman; Ying Xu 001 (J. Comput. Sci. Technol., 2005)

Understanding microbial genomic structures and applications to biological pathway inference. - Zhengchang Su; Fenglou Mao; Hongwei Wu; PhuongAn Dam; Xin Chen 037; Tao Jiang 001; Victor Olman; Brian Palenik; Ying Xu 001 (GrC, 2006)

DigitalTree: A Tool for Displaying Biological Data in Tree Structure. - Robin Kramer; Victor Olman; Ying Xu 001; Dong Xu 002 (International Conference on Computational Science (2), 2006)

A Point-Process Model for Rapid Identification of Post-Translational Modifications. - Bo Yan; G. Tong Zhou; Peng Wang; Zhijie Liu; Vincent A. Emanuele II; Victor Olman; Ying Xu 001 (Pacific Symposium on Biocomputing, 2006)

Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. - Victor Olman; Chindo Hicks; Peng Wang; Ying Xu 001 (J. Bioinform. Comput. Biol., 2006)

Mapping of orthologous genes in the context of biological pathways: An application of integer programming. - Fenglou Mao; Zhengchang Su; Victor Olman; PhuongAn Dam; Zhijie Liu; Ying Xu 001 (Proc. Natl. Acad. Sci. USA, 2006)

An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. - Hongwei Wu; Fenglou Mao; Victor Olman; Ying Xu 001 (ISBRA, 2007)

Prediction of cis-Regulatory Elements: from High-Information Content Analysis to Motif Identification. - Guojun Li; Jizhu Lu; Victor Olman; Ying Xu 001 (J. Bioinform. Comput. Biol., 2007)

Barcodes for genomes and applications. - Fengfeng Zhou; Victor Olman; Ying Xu 001 (BMC Bioinform., 2008)

On application of directons to functional classification of genes in prokaryotes. - Hongwei Wu; Fenglou Mao; Victor Olman; Ying Xu 001 (Comput. Biol. Chem., 2008)

Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. - Kyle Ellrott; Jun-tao Guo; Victor Olman; Ying Xu 001 (J. Bioinform. Comput. Biol., 2008)

RNACluster: An integrated tool for RNA secondary structure comparison and clustering. - Qi Liu 019; Victor Olman; Huiqing Liu; Xiuzi Ye; Shilun Qiu; Ying Xu 001 (J. Comput. Chem., 2008)

Large-Scale Analyses of Glycosylation in Cellulases. - Fengfeng Zhou; Victor Olman; Ying Xu 001 (Genom. Proteom. Bioinform., 2009)

DOOR: a database for prokaryotic operons. - Fenglou Mao; PhuongAn Dam; Jacky Chou; Victor Olman; Ying Xu 001 (Nucleic Acids Res., 2009)

Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. - Victor Olman; Fenglou Mao; Hongwei Wu; Ying Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Functional Understanding of the Diverse exon-intron Structures of Human GPCR genes. - Dorothy A. Hammond; Victor Olman; Ying Xu 001 (J. Bioinform. Comput. Biol., 2014)