OMGProm: a database of orthologous mammalian gene promoters. - Saranyan K. Palaniswamy; Victor X. Jin; Hao Sun 001; Ramana V. Davuluri (Bioinform., 2005)

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. - Lang Li 001; Alfred S. L. Cheng; Victor X. Jin; Henry H. Paik; Meiyun Fan; Xiaoman Li; Wei Zhang; Jason Robarge; Curtis Balch; Ramana V. Davuluri; Sun Kim; Tim Hui-Ming Huang; et al. (Bioinform., 2006)

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs. - Victor X. Jin; Gregory A. Singer; Francisco J. Agosto-Perez; Sandya Liyanarachchi; Ramana V. Davuluri (BMC Bioinform., 2006)

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. - Hao Sun 001; Saranyan K. Palaniswamy; Twyla T. Pohar; Victor X. Jin; Tim Hui-Ming Huang; Ramana V. Davuluri (Nucleic Acids Res., 2006)

Detecting Localized Interspersed Motifs in Genomic Sequences. - Victor X. Jin; Marcel Turcotte (IEEE Trans. Instrum. Meas., 2007)

De novo identification of in vivo binding sites from ChIP-chip data. - Victor X. Jin; Alina Rabinovich; Henny O'Geen; Sushma Iyengar; Peggy J. Farnham (BMC Bioinform., 2008)

W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data. - Victor X. Jin; Jeff Apostolos; Naga Satya Venkateswara Ra Nagisetty; Peggy J. Farnham (Bioinform., 2009)

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data. - Fei Gu; Hang-Kai Hsu; Pei-Yin Hsu; Jiejun Wu; Yilin Ma; Jeffrey D. Parvin; Tim Hui-Ming Huang; Victor X. Jin (BMC Syst. Biol., 2010)

HRTBLDb: an informative data resource for hormone receptors target binding loci. - Brian A. Kennedy; Wenqing Gao; Tim Hui-Ming Huang; Victor X. Jin (Nucleic Acids Res., 2010)

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data. - Xun Lan; Russell Bonneville; Jeff Apostolos; Wangcheng Wu; Victor X. Jin (Bioinform., 2011)

Integrative identification of core genetic regulatory modules via a structural model-based clustering method. - Binhua Tang; Sushing Chen; Victor X. Jin (Int. J. Comput. Biol. Drug Des., 2011)

A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes. - Russell Bonneville; Victor X. Jin (Bioinform., 2013)

Power Spectrum-Based Genomic Feature Extraction from High-Throughput ChIP-seq Sequences. - Binhua Tang; Yufan Zhou; Victor X. Jin (ICIC (1), 2016)

Inference of hierarchical regulatory network of TCF7L2 binding sites in MCF7 cell line. - Yao Wang; Rui Wang; Victor X. Jin (Int. J. Comput. Biol. Drug Des., 2016)

abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis. - Omer Ali; Amna Farooq; Mingyi Yang; Victor X. Jin; Magnar Bjørås; Junbai Wang (BMC Bioinform., 2022)

Integrated analysis of differential intra-chromosomal community interactions: A study of breast cancer. - Zhihao Yao 009; Kun Fang; Gege Liu; Magnar Bjørås; Victor X. Jin; Junbai Wang (Artif. Intell. Medicine, 2025)