A high-throughput phenotyping algorithm is portable from adult to pediatric populations. - Alon Geva; Molei Liu; Vidul Ayakulangara Panickan; Paul Avillach; Tianxi Cai; Kenneth D. Mandl (J. Am. Medical Informatics Assoc., 2021)

Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. - Chuan Hong; Everett Neil Rush; Molei Liu; Doudou Zhou; Jiehuan Sun; Aaron Sonabend W.; Victor M. Castro; Petra Schubert; Vidul Ayakulangara Panickan; Tianrun Cai; Lauren Costa; Zeling He; et al. (npj Digit. Medicine, 2021)

Knowledge-Driven Online Multimodal Automated Phenotyping System. - Molei Liu; Sara Morini; Xin Xiong; Chuan Hong; Clara-Lea Bonzel; Vidul Ayakulangara Panickan; Everett Neil Rush; Yuk-Lam Ho; Kelly Cho; J. Michael Gaziano; Katherine P. Liao; Tianxi Cai; et al. (AMIA, 2022)

Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review. - Tianrun Cai; Zeling He; Chuan Hong; Yichi Zhang; Yuk-Lam Ho; Jacqueline Honerlaw; Alon Geva; Vidul Ayakulangara Panickan; Amanda King; David R. Gagnon; J. Michael Gaziano; Kelly Cho; et al. (J. Biomed. Informatics, 2022)

Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. - Doudou Zhou; Ziming Gan; Xu Shi; Alina Patwari; Everett Neil Rush; Clara-Lea Bonzel; Vidul Ayakulangara Panickan; Chuan Hong; Yuk-Lam Ho; Tianrun Cai; Lauren Costa; Xiaoou Li; et al. (J. Biomed. Informatics, 2022)

Multimodal representation learning for predicting molecule-disease relations. - Jun Wen; Xiang Zhang 012; Everett Neil Rush; Vidul Ayakulangara Panickan; Xingyu Li; Tianrun Cai; Doudou Zhou; Yuk-Lam Ho; Lauren Costa; Edmon Begoli; Chuan Hong; J. Michael Gaziano; et al. (Bioinform., 2023)

Centralized Interactive Phenomics Resource: an integrated online phenomics knowledgebase for health data users. - Jacqueline Honerlaw; Yuk-Lam Ho; Francesca Fontin; Michael Murray; Ashley Galloway; David Heise; Keith Connatser; Laura Davies; Jeffrey Gosian; Monika Maripuri; John Russo 001; Rahul Sangar; et al. (J. Am. Medical Informatics Assoc., 2024)

Multisource representation learning for pediatric knowledge extraction from electronic health records. - Mengyan Li; Xiaoou Li; Kevin Pan; Alon Geva; Doris Yang; Sara Morini Sweet; Clara-Lea Bonzel; Vidul Ayakulangara Panickan; Xin Xiong; Kenneth D. Mandl; Tianxi Cai (npj Digit. Medicine, 2024)

LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. - Jun Wen; Jue Hou; Clara-Lea Bonzel; Yihan Zhao; Victor M. Castro; Vivian S. Gainer; Dana Weisenfeld; Tianrun Cai; Yuk-Lam Ho; Vidul Ayakulangara Panickan; Lauren Costa; Chuan Hong; et al. (Patterns, 2024)

ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis. - Ziming Gan; Doudou Zhou; Everett Neil Rush; Vidul Ayakulangara Panickan; Yuk-Lam Ho; George Ostrouchov; Zhiwei Xu; Shuting Shen; Xin Xiong; Kimberly F. Greco; Chuan Hong; Clara-Lea Bonzel; et al. (J. Biomed. Informatics, 2025)

DOME: Directional medical embedding vectors from Electronic Health Records. - Jun Wen; Hao Xue 005; Everett Neil Rush; Vidul Ayakulangara Panickan; Tianrun Cai; Doudou Zhou; Yuk-Lam Ho; Lauren Costa; Edmon Begoli; Chuan Hong; J. Michael Gaziano; Kelly Cho; et al. (J. Biomed. Informatics, 2025)

Label efficient phenotyping for Long COVID using electronic health records. - Chuan Hong; Jun Wen; Harrison G. Zhang; Vidul Ayakulangara Panickan; Doris Yang; Alicia W. Chen; Xin Xiong; Xuan Wang; Michele Morris; Sara Morini; Rahul Sangar; Andrew Dey; et al. (npj Digit. Medicine, 2025)

Representation Learning to Advance Multi-institutional Studies with Electronic Health Record Data. - Doudou Zhou; Han Tong; Linshanshan Wang; Suqi Liu; Xin Xiong; Ziming Gan; Romain Griffier; Boris P. Hejblum; Yun-Chung Liu; Chuan Hong; Clara-Lea Bonzel; Tianrun Cai; et al. (CoRR, 2025)