Identification of Glucose-Binding Pockets in Human Serum Albumin Using Support Vector Machine and Molecular Dynamics Simulations. - Preethi Ranganarayanan; Narmadha Thanigesan; R. P. Vivek-Ananth; Valadi K. Jayaraman; Vigneshwar Ramakrishnan (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Support vector machine-based prediction of pore-forming toxins (PFT) using distributed representation of reduced alphabets. - Hrushikesh Bhosale; Vigneshwar Ramakrishnan; Valadi K. Jayaraman (J. Bioinform. Comput. Biol., 2021)

Towards understanding the mechanism of action of a polyherbal formulation using a multi-pronged strategy. - H. Agnes Preethy; Kayalvizhi Rajendran; Abhilipsha Mishra; Akhilasree Karthikeyan; David Raj Chellappan; Vigneshwar Ramakrishnan; Uma Maheswari Krishnan (Comput. Biol. Medicine, 2022)

Identification of Phase Separating Proteins With Distributed Reduced Alphabet Representations of Sequences. - Ashwin Lahorkar; Hrushikesh Bhosale; Aamod Sane; Vigneshwar Ramakrishnan; Valadi K. Jayaraman (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Effect of osmolytes on the EcoRI endonuclease: Insights into hydration and protein dynamics from molecular dynamics simulations. - Aathithya Diaz; Vigneshwar Ramakrishnan (Comput. Biol. Chem., 2023)