LuxHS: DNA Methylation Analysis with Spatially Varying Correlation Structure. - Viivi Halla-aho; Harri Lähdesmäki (IWBBIO, 2020)

LuxUS: DNA methylation analysis using generalized linear mixed model with spatial correlation. - Viivi Halla-aho; Harri Lähdesmäki (Bioinform., 2020)

Probabilistic modeling methods for cell-free DNA methylation based cancer classification. - Viivi Halla-aho; Harri Lähdesmäki (BMC Bioinform., 2022)

LuxRep: a technical replicate-aware method for bisulfite sequencing data analysis. - Maia H. Malonzo; Viivi Halla-aho; Mikko Konki; Riikka J. Lund; Harri Lähdesmäki (BMC Bioinform., 2022)

Estimating treatment effects from single-arm trials via latent-variable modeling. - Manuel Haussmann; Tran Minh Son Le; Viivi Halla-aho; Samu Kurki; Jussi Leinonen; Miika Koskinen; Samuel Kaski; Harri Lähdesmäki (AISTATS, 2024)