Bifurcation discovery tool. - Vijay Chickarmane; Sri R. Paladugu; Frank T. Bergmann; Herbert M. Sauro (Bioinform., 2005)

The SBW-CMATLAB interface. - Cameron Wellock; Vijay Chickarmane; Herbert M. Sauro (Bioinform., 2005)

Conservation analysis of large biochemical networks. - Ravishankar Rao Vallabhajosyula; Vijay Chickarmane; Herbert M. Sauro (Bioinform., 2006)

Transcriptional Dynamics of the Embryonic Stem Cell Switch. - Vijay Chickarmane; Carl Troein; Ulrike A. Nuber; Herbert M. Sauro; Carsten Peterson (PLoS Comput. Biol., 2006)

A Model for p53 Dynamics Triggered by DNA Damage. - Vijay Chickarmane; Animesh Ray; Herbert M. Sauro; Ali Nadim (SIAM J. Appl. Dyn. Syst., 2007)

Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility. - Vijay Chickarmane; Tariq Enver; Carsten Peterson (PLoS Comput. Biol., 2009)

Simulating the Mammalian Blastocyst - Molecular and Mechanical Interactions Pattern the Embryo. - Pawel Krupinski; Vijay Chickarmane; Carsten Peterson (PLoS Comput. Biol., 2011)

Probing the role of stochasticity in a model of the embryonic stem cell - heterogeneous gene expression and reprogramming efficiency. - Vijay Chickarmane; Victor Olariu; Carsten Peterson (BMC Syst. Biol., 2012)

Validation of a Hospital Digital Twin with Machine Learning. - Muhammad Aurangzeb Ahmad; Vijay Chickarmane; Farinaz Sabz Ali Pour; Nima Shariari; Taposh Dutta Roy (ICHI, 2023)