OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif. - Amar Drawid; Nupur Gupta; Vijayalakshmi H. Nagaraj; Céline Gélinas; Anirvan M. Sengupta (BMC Bioinform., 2009)

Locus dependence in epigenetic chromatin silencing. - Swagatam Mukhopadhyay; Vijayalakshmi H. Nagaraj; Anirvan M. Sengupta (Biosyst., 2010)

Cognitive Studies of Knowledge Representation and Use of Mental Health Clinical Guidelines by Community Health Workers: A Framework. - Trisha R. Sanghvi; Vijayalakshmi H. Nagaraj; Odille Chang; M. Sriram Iyengar; Wayne Irava; Vimla L. Patel (AMIA, 2018)