Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria. - Klaus O. Kopec; Vikram Alva; Andrei N. Lupas (Bioinform., 2010)

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. - Vikram Alva; Seung-Zin Nam; Johannes Söding; Andrei N. Lupas (Nucleic Acids Res., 2016)

Histones predate the split between bacteria and archaea. - Vikram Alva; Andrei N. Lupas (Bioinform., 2019)

DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences. - Jan Ludwiczak; Aleksander Winski; Krzysztof Szczepaniak; Vikram Alva; Stanislaw Dunin-Horkawicz (Bioinform., 2019)

An astonishing wealth of new proteasome homologs. - Adrian C. D. Fuchs; Vikram Alva; Andrei N. Lupas (Bioinform., 2021)

pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. - Kamil Kaminski; Jan Ludwiczak; Kamil Pawlicki; Vikram Alva; Stanislaw Dunin-Horkawicz (Bioinform., 2023)