Multi-scale correlation structure of gene expression in the brain. - Michael Hawrylycz; Lydia Ng; Damon Page; John Morris; Christopher Lau; Sky Faber; Vance Faber; Susan Sunkin; Vilas Menon; Ed S. Lein; Allan Jones (Neural Networks, 2011)

Dynamic Bayesian Clustering. - Anna Fowler; Vilas Menon; Nicholas A. Heard (J. Bioinform. Comput. Biol., 2013)

The Influence of Synaptic Weight Distribution on Neuronal Population Dynamics. - Ramakrishnan Iyer; Vilas Menon; Michael A. Buice; Christof Koch; Stefan Mihalas (PLoS Comput. Biol., 2013)

scOrange - a tool for hands-on training of concepts from single-cell data analytics. - Martin Strazar; Lan Zagar; Jaka Kokosar; Vesna Tanko; Ales Erjavec; Pavlin G. Policar; Anze Staric; Janez Demsar; Gad Shaulsky; Vilas Menon; Andrew Lemire; Anup Parikh; et al. (Bioinform., 2019)

Selecting single cell clustering parameter values using subsampling-based robustness metrics. - Ryan B. Patterson-Cross; Ariel J. Levine; Vilas Menon (BMC Bioinform., 2021)