Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons of Simulations Results. - Vilda Purutçuoglu; Ernst Wit (J. Integr. Bioinform., 2006)

Bayesian inference of the kinetic parameters of a realistic MAPK/ERK pathway. - Vilda Purutçuoglu; Ernst Wit (BMC Syst. Biol., 2007)

Comparing Clustering Techniques for Real Microarray Data. - Vilda Purutçuoglu Gazi; Elif Kayis (ASONAM, 2012)

Survey of Background Normalisation in Affymetrix Arrays and a Case Study. - Vilda Purutçuoglu; Elif Kayis; Gerhard-Wilhelm Weber (Advances in Intelligent Modelling and Simulation, 2012)

Inference of the stochastic MAPK pathway by modified diffusion bridge method. - Vilda Purutçuoglu (Central Eur. J. Oper. Res., 2013)

Loop-based conic multivariate adaptive regression splines is a novel method for advanced construction of complex biological networks. - Ezgi Ayyildiz; Vilda Purutçuoglu; Gerhard-Wilhelm Weber (Eur. J. Oper. Res., 2018)

Modeling of various biological networks via LCMARS. - Ezgi Ayyildiz; Vilda Purutçuoglu (J. Comput. Sci., 2018)

Outlier detection and quasi-periodicity optimization algorithm: Frequency domain based outlier detection (FOD). - Ekin Can Erkus; Vilda Purutçuoglu (Eur. J. Oper. Res., 2021)

A new collective anomaly detection approach using pitch frequency and dissimilarity: Pitchy anomaly detection (PAD). - Ekin Can Erkus; Vilda Purutçuoglu (J. Comput. Sci., 2023)

Optimal model description of finance and human factor indices. - Betül Kalayci; Vilda Purutçuoglu; Gerhard-Wilhelm Weber (Central Eur. J. Oper. Res., 2025)