A dissimilarity matrix between protein atom classes based on Gaussian mixtures. - Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S. Johnson (Bioinform., 2002)

A Bayesian molecular interaction library. - Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S. Johnson (J. Comput. Aided Mol. Des., 2003)

BODIL: a molecular modeling environment for structure-function analysis and drug design. - Jukka V. Lehtonen; Dan-Johan Still; Ville-Veikko Rantanen; Jan Ekholm; Dag Björklund; Zuhair Iftikhar; Mikko Huhtala; Susanna Repo; Antti Jussila; Jussi Jaakkola; Olli T. Pentikäinen; Tommi H. Nyrönen; et al. (J. Comput. Aided Mol. Des., 2004)

a Priori Contact Preferences in Molecular Recognition. - Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S. Johnson (J. Bioinform. Comput. Biol., 2005)