Lthreader: Prediction of Ligand-Receptor Interactions Using Localized Threading. - Vinay Pulim; Jadwiga R. Bienkowska; Bonnie Berger (Pacific Symposium on Biocomputing, 2007)

Optimal contact map alignment of protein-protein interfaces. - Vinay Pulim; Bonnie Berger; Jadwiga R. Bienkowska (Bioinform., 2008)

Protein-protein interaction prediction using local threading. - Vinay Pulim (2008)