Optimization based automated curation of metabolic reconstructions. - Vinay Satish Kumar; Madhukar S. Dasika; Costas D. Maranas (BMC Bioinform., 2007)

GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions. - Vinay Satish Kumar; Costas D. Maranas (PLoS Comput. Biol., 2009)

A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189. - Patrick F. Suthers; Madhukar S. Dasika; Vinay Satish Kumar; Gennady Denisov; John I. Glass; Costas D. Maranas (PLoS Comput. Biol., 2009)

Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans. - Vinay Satish Kumar; James G. Ferry; Costas D. Maranas (BMC Syst. Biol., 2011)

A Method to Constrain Genome-Scale Models with 13C Labeling Data. - Héctor García Martín; Vinay Satish Kumar; Daniel Weaver; Amit Ghosh; Victor Chubukov; Aindrila Mukhopadhyay; Adam P. Arkin; Jay D. Keasling (PLoS Comput. Biol., 2015)

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. - Garrett W. Birkel; Amit Ghosh; Vinay Satish Kumar; Daniel Weaver; David Ando; Tyler W. H. Backman; Adam P. Arkin; Jay D. Keasling; Héctor García Martín (BMC Bioinform., 2017)

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. - Garrett W. Birkel; Amit Ghosh; Vinay Satish Kumar; Daniel Weaver; David Ando; Tyler W. H. Backman; Adam P. Arkin; Jay D. Keasling; Héctor García Martín (BMC Bioinform., 2017)