Design of piece-wise maps for spread spectrum communication using genetic programming. - Vinay Varadan; Henry Leung (ISCAS (3), 2001)

Secure communication using a chaos based signal encryption scheme. - Krishnamurthy Murali; Haiyang Yu 006; Vinay Varadan; Henry Leung (IEEE Trans. Consumer Electron., 2001)

Reconstruction of polynomial systems from noisy time-series measurements using genetic programming. - Vinay Varadan; Henry Leung (IEEE Trans. Ind. Electron., 2001)

System Modeling and Design using Genetic Programming. - Henry Leung; Vinay Varadan (IEEE ICCI, 2002)

Chaotic system reconstruction from noisy time series measurements using improved least squares genetic programming. - Vinay Varadan; Henry Leung (ISCAS (3), 2002)

Classification of audio radar signals using radial basis function neural networks. - Trent McConaghy; Henry Leung; Éloi Bossé; Vinay Varadan (IEEE Trans. Instrum. Meas., 2003)

Unsupervised evidence integration. - Philip M. Long; Vinay Varadan; Sarah Gilman; Mark Treshock; Rocco A. Servedio (ICML, 2005)

Computational inference of the molecular logic for synaptic connectivity in C. elegans. - Vinay Varadan; David M. Miller III; Dimitris Anastassiou (ISMB (Supplement of Bioinformatics), 2006)

Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis. - Vinay Varadan; Dimitris Anastassiou (PLoS Comput. Biol., 2006)

Dynamical model reconstruction and accurate prediction of power-pool time series. - Vinay Varadan; Henry Leung; Éloi Bossé (IEEE Trans. Instrum. Meas., 2006)

Towards identification of thematic overlaps in gene sets. - Nilanjana Banerjee; Vinay Varadan; Sitharthan Kamalakaran; Angel Janevski (GENSiPS, 2009)

Tools for High Throughput Differential Methylation Study in Cancer. - Nevenka Dimitrova; Sitharthan Kamalakaran; Angel Janevski; Nilanjana Banerjee; Vinay Varadan; Robert Lucito; James Hicks (ICT Innovations, 2009)

PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment. - Angel Janevski; Sitharthan Kamalakaran; Nilanjana Banerjee; Vinay Varadan; Nevenka Dimitrova (BMC Bioinform., 2009)

Pathway and network analysis probing epigenetic influences on chemosensitivity in ovarian cancer. - Nilanjana Banerjee; Angel Janevski; Sitharthan Kamalakaran; Vinay Varadan; Robert Lucito; Nevenka Dimitrova (GENSiPS, 2010)

Comparative copy number variation from whole genome sequencing. - Angel Janevski; Vinay Varadan; Sitharthan Kamalakaran; Nilanjana Banerjee; Nevenka Dimitrova (GENSiPS, 2011)

A method for finding novel associations between genome-wide copy number and dna methylation patterns. - Man-Hung Eric Tang; Vinay Varadan; Sid Kamalakaran; Michael Q. Zhang; Nevenka Dimitrova; James Hicks (GENSiPS, 2011)

Statistical assessment of gene fusion detection algorithms using RNA Sequencing Data. - Vinay Varadan; Angel Janevski; Sitharthan Kamalakaran; Nilanjana Banerjee; Nevenka Dimitrova; Lyndsay N. Harris (SSP, 2012)

The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches. - Vinay Varadan; Prateek Mittal; Charles J. Vaske; Stephen C. Benz (IEEE Signal Process. Mag., 2012)

Identification and characterization of gene fusions in breast cancer - A non-trivial pursuit. - Vinay Varadan; Vartika Agrawal; Lyndsay N. Harris; Nevenka Dimitrova (GlobalSIP, 2013)

Identifying gene subnetworks associated with clinical outcome in ovarian cancer using Network Based Coalition Game. - Abolfazl Razi; Fatemeh Afghah; Vinay Varadan (EMBC, 2015)

Non-linear Bayesian framework to determine the transcriptional effects of cancer-associated genomic aberrations. - Abolfazl Razi; Nilanjana Banerjee; Nevenka Dimitrova; Vinay Varadan (EMBC, 2015)

Radiogenomic analysis of hypoxia pathway reveals computerized MRI descriptors predictive of overall survival in glioblastoma. - Niha G. Beig; Jay Patel; Prateek Prasanna; Sasan Partovi; Vinay Varadan; Anant Madabhushi; Pallavi Tiwari (Computer-Aided Diagnosis, 2017)

Radiogenomic characterization of response to chemo-radiation therapy in glioblastoma is associated with PI3K/AKT/mTOR and apoptosis signaling pathways. - Niha G. Beig; Prateek Prasanna; Virginia B. Hill; Ruchika Verma; Vinay Varadan; Anant Madabhushi; Pallavi Tiwari (Computer-Aided Diagnosis, 2019)

Deep learning-based prediction of response to HER2-targeted neoadjuvant chemotherapy from pre-treatment dynamic breast MRI: A multi-institutional validation study. - Nathaniel Braman; Mohammed El Adoui; Manasa Vulchi; Paulette Turk; Maryam Etesami; Pingfu Fu; Kaustav Bera; Stylianos Drisis; Vinay Varadan; Donna Plecha; Mohammed Benjelloun; Jame Abraham; et al. (CoRR, 2020)

SYSMut: decoding the functional significance of rare somatic mutations in cancer. - Sirvan Khalighi; Peronne Joseph; Deepak Babu; Salendra Singh; Thomas LaFramboise; Kishore Guda; Vinay Varadan (Briefings Bioinform., 2022)