Evaluation of Guidelines to Help Patients Recognize Myocardial Infarction. - Hamish S. F. Fraser; Lucila Ohno-Machado; Vincent Carey; Gregory Sharp; Shapur Naimi (AMIA, 1999)

An extensible application for assembling annotation for genomic data. - Jianhua Zhang; Vincent J. Carey; Robert Gentleman (Bioinform., 2003)

Importing MAGE-ML format microarray data into BioConductor. - Steffen Durinck; Joke Allemeersch; Vincent Carey; Yves Moreau; Bart De Moor (Bioinform., 2004)

Network structures and algorithms in Bioconductor. - Vincent J. Carey; Jeff Gentry; Elizabeth Whalen; Robert Gentleman (Bioinform., 2005)

GGtools: analysis of genetics of gene expression in bioconductor. - Vincent J. Carey; Martin Morgan; Seth Falcon; Ross Lazarus; Robert Gentleman (Bioinform., 2007)

Graphs in molecular biology. - Wolfgang Huber; Vincent J. Carey; Li Long; Seth Falcon; Robert Gentleman (BMC Bioinform., 2007)

Machine Learning and Its Applications to Biology. - Adi L. Tarca; Vincent J. Carey; Xue-wen Chen 001; Roberto Romero; Sorin Draghici (PLoS Comput. Biol., 2007)

SGDI: System for Genomic Data Integration. - Vincent J. Carey; Jeff Gentry; Deepayan Sarkar; Robert Gentleman; Srini Ramaswamy (Pacific Symposium on Biocomputing, 2008)

Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. - Vincent J. Carey; Robert Gentleman (Pacific Symposium on Biocomputing, 2009)

Power enhancement via multivariate outlier testing with gene expression arrays. - Adam L. Asare; Zhong Gao; Vincent J. Carey; Richard Wang; Vicki Seyfert-Margolis (Bioinform., 2009)

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. - Vincent J. Carey; Adam R. Davis; Michael F. Lawrence; Robert Gentleman; Benjamin A. Raby (Bioinform., 2009)

rtracklayer: an R package for interfacing with genome browsers. - Michael F. Lawrence; Robert Gentleman; Vincent J. Carey (Bioinform., 2009)

Platform dependence of inference on gene-wise and gene-set involvement in human lung development. - Rose Du; Kelan Tantisira; Vincent J. Carey; Soumyaroop Bhattacharya; Stephanie Metje; Alvin T. Kho; Barbara J. Klanderman; Roger Gaedigk; Ross Lazarus; Thomas J. Mariani; J. Steven Leeder; Scott T. Weiss (BMC Bioinform., 2009)

A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism. - Jen-hwa Chu; Scott T. Weiss; Vincent J. Carey; Benjamin A. Raby (BMC Syst. Biol., 2009)

Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. - Jen-hwa Chu; Ross Lazarus; Vincent J. Carey; Benjamin A. Raby (BMC Syst. Biol., 2011)

R Language. - Robert Gentleman; Wolfgang Huber; Vincent J. Carey (International Encyclopedia of Statistical Science, 2011)

Software for Computing and Annotating Genomic Ranges. - Michael F. Lawrence; Wolfgang Huber; Hervé Pagès; Patrick Aboyoun; Marc Carlson; Robert Gentleman; Martin T. Morgan; Vincent J. Carey (PLoS Comput. Biol., 2013)

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. - Valerie Obenchain; Michael F. Lawrence; Vincent J. Carey; Stephanie M. Gogarten; Paul Shannon; Martin Morgan (Bioinform., 2014)

Public data and open source tools for multi-assay genomic investigation of disease. - Lavanya Kannan; Marcel Ramos; Angela Re; Nehme Hachem; Zhaleh Safikhani; Deena M. A. Gendoo; Sean Davis 001; David Gomez-Cabrero; Robert Castelo; Kasper D. Hansen; Vincent J. Carey; Martin Morgan; et al. (Briefings Bioinform., 2016)

ogttMetrics: Data structures and algorithms for oral glucose tolerance tests. - Benjamin J. Stubbs; Keith Frankston; Marcel Ramos; Nancy Laranjo; Frank M. Sacks; Vincent J. Carey (F1000Research, 2017)

deconvSeq: deconvolution of cell mixture distribution in sequencing data. - Rose Du; Vincent J. Carey; Scott T. Weiss (Bioinform., 2019)

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. - Shweta Gopaulakrishnan; Samuela Pollack; BJ Stubbs; Hervé Pagès; John Readey; Sean Davis 001; Levi Waldron; Martin Morgan; Vincent J. Carey (F1000Research, 2019)

BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem. - Shian Su; Vincent J. Carey; Lori A. Shepherd; Matthew E. Ritchie; Martin T. Morgan; Sean Davis 001 (F1000Research, 2019)

Toward a gold standard for benchmarking gene set enrichment analysis. - Ludwig Geistlinger; Gergely Csaba; Mara Santarelli; Marcel Ramos; Lucas Schiffer; Nitesh Turaga; Charity W. Law; Sean Davis 001; Vincent J. Carey; Martin Morgan; Ralf Zimmer; Levi Waldron (Briefings Bioinform., 2021)

Curated single cell multimodal landmark datasets for R/Bioconductor. - Kelly B. Eckenrode; Dario Righelli; Marcel Ramos; Ricard Argelaguet; Christophe Vanderaa; Ludwig Geistlinger; Aedín C. Culhane; Laurent Gatto; Vincent J. Carey; Martin Morgan; Davide Risso; Levi Waldron (PLoS Comput. Biol., 2023)

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. - Michele Gentili; Kimberly Glass; Enrico Maiorino; Brian D. Hobbs; Zhonghui Xu; Peter J. Castaldi; Michael H. Cho; Craig P. Hersh; Dandi Qiao; Jarrett D. Morrow; Vincent J. Carey; John Platig; et al. (PLoS Comput. Biol., 2024)

Bioconductor: Planning a third decade of comprehensive support for genomic data science. - Vincent J. Carey (Patterns, 2025)

Eleven quick tips for writing a Bioconductor package. - Charlotte Soneson; Lori A. Shepherd; Marcel Ramos; Kevin C. Rue-Albrecht; Johannes Rainer; Hervé Pagès; Vincent J. Carey (PLoS Comput. Biol., 2025)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)