Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models. - Michael Seifert; Ali Banaei; Jens Keilwagen; Michael Florian Mette; Andreas Houben; François Roudier; Vincent Colot; Ivo Grosse; Marc Strickert (BIOSIGNALS, 2009)

Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée. - Caroline Bérard; Marie-Laure Martin-Magniette; Alexandra To; François Roudier; Vincent Colot; Stéphane Robin (Monde des Util. Anal. Données, 2009)

ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. - Chong-Jian Chen; Nicolas Servant; Joern Toedling; Alexis Sarazin; Antonin Marchais; Evelyne Duvernois-Berthet; Valérie Cognat; Vincent Colot; Olivier Voinnet; Edith Heard; Constance Ciaudo; Emmanuel Barillot (Bioinform., 2012)

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays. - Michael Seifert; Sandra Cortijo; Maria Colomé-Tatché; Frank Johannes; François Roudier; Vincent Colot (Bioinform., 2012)

TE-Tracker: systematic identification of transposition events through whole-genome resequencing. - Arthur Gilly; Mathilde Etcheverry; Mohammed-Amin Madoui; Julie Guy; Leandro Quadrana; Adriana Alberti; Antoine Martin; Tony Heitkam; Stefan Engelen; Karine Labadie; Jeremie Le Pen; Patrick Wincker; et al. (BMC Bioinform., 2014)