Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences. - Michel Dumontier; Alison Callahan; Jose Cruz-Toledo; Peter Ansell; Vincent Emonet; François Belleau; Arnaud Droit (ISWC (Posters & Demos), 2014)

Roadmap for a Multilingual BioPortal. - Clément Jonquet; Vincent Emonet; Mark A. Musen (MSW@ESWC, 2015)

Réconciliation d'alignements multi-lingues dans BioPortal. - Amina Annane; Vincent Emonet; Faiçal Azouaou; Clément Jonquet (IC, 2016)

Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Mark A. Musen; Cyril Pommier; Pierre Larmande (ICBO/BioCreative, 2016)

Multilingual Mapping Reconciliation between English-French Biomedical Ontologies. - Amina Annane; Vincent Emonet; Faiçal Azouaou; Clément Jonquet (WIMS, 2016)

ICD10 Coding of Death Certificates with the NCBO and SIFR Annotator(s) at CLEF eHealth 2017 Task 1. - Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Clément Jonquet (CLEF (Working Notes), 2017)

YAM++ Online: A Web Platform for Ontology and Thesaurus Matching and Mapping Validation. - Zohra Bellahsene; Vincent Emonet; DuyHoa Ngo; Konstantin Todorov (ESWC (Satellite Events), 2017)

New Generation Metadata Vocabulary for Ontology Description and Publication. - Biswanath Dutta; Anne Toulet; Vincent Emonet; Clément Jonquet (MTSR, 2017)

Data2Services: enabling automated conversion of data to services. - Vincent Emonet; Amrapali Zaveri; Alexander Malic; Andreea Grigoriu; Michel Dumontier (SWAT4LS, 2018)

Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+. - Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Soumia Melzi; Jitendra Jonnagaddala; Clément Jonquet (Bioinform., 2018)

SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes. - Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Stella Zevio; Clément Jonquet (BMC Bioinform., 2018)

AgroPortal: A vocabulary and ontology repository for agronomy. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Marie-Angélique Laporte; Mark A. Musen; Valeria Pesce; Pierre Larmande (Comput. Electron. Agric., 2018)

Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal. - Clément Jonquet; Anne Toulet; Biswanath Dutta; Vincent Emonet (J. Data Semant., 2018)

Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. - Chang Sun 001; Vincent Emonet; Johan van Soest; Annemarie Koster; Andre Dekker; Michel Dumontier (SWAT4HCLS, 2019)

Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019. - Nacira Abbas; Kholoud Alghamdi; Mortaza Alinam; Francesca Alloatti; Glenda C. M. Amaral; Claudia d'Amato; Luigi Asprino; Martin Beno; Felix Bensmann; Russa Biswas; Ling Cai; Riley Capshaw; et al. (CoRR, 2020)

Semantic micro-contributions with decentralized nanopublication services. - Tobias Kuhn; Ruben Taelman; Vincent Emonet; Haris Antonatos; Stian Soiland-Reyes; Michel Dumontier (PeerJ Comput. Sci., 2021)

Comparison results of FAIR Evaluation tools. - Chang Sun 001; Vincent Emonet; Michel Dumontier (Zenodo, 2021)

A Comprehensive Comparison of Automated FAIRness Evaluation Tools. - Chang Sun 001; Vincent Emonet; Michel Dumontier (SWAT4HCLS, 2022)

Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. - Elif Ozkan; Remzi Celebi; Arif Yilmaz; Vincent Emonet; Michel Dumontier (SWAT4HCLS, 2023)

LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs. - Vincent Emonet; Jerven T. Bolleman; Severine Duvaud; Tarcisio Mendes de Farias; Ana Claudia Sima (HGAIS@ISWC, 2024)

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications. - Jerven T. Bolleman; Vincent Emonet; Adrian M. Altenhoff; Amos Bairoch; Marie-Claude Blatter; Alan J. Bridge; Severine Duvaud; Elisabeth Gasteiger; Dmitry Kuznetsov; Sébastien Moretti; Pierre-André Michel; Anne Morgat; et al. (CoRR, 2024)

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. - J. Harry Caufield; Harshad Hegde; Vincent Emonet; Nomi L. Harris; Marcin P. Joachimiak; Nicolas Matentzoglu; Hyeongsik Kim 001; Sierra A. T. Moxon; Justin T. Reese; Melissa A. Haendel; Peter N. Robinson; Christopher J. Mungall (Bioinform., 2024)

A user-friendly SPARQL query editor powered by lightweight metadata. - Vincent Emonet; Ana Claudia Sima; Tarcisio Mendes de Farias (CoRR, 2025)