Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic Invariants. - Vincent Ferretti; B. Franz Lang; David Sankoff (J. Comput. Biol., 1994)

Original Synteny. - Vincent Ferretti; Joseph H. Nadeau; David Sankoff (CPM, 1996)

On the Nadeau-Taylor Theory of Conserved Chromosome Segments. - David Sankoff; Marie-Noelle Parent; Isabelle Marchand; Vincent Ferretti (CPM, 1997)

Conserved Segment Identification. - David Sankoff; Vincent Ferretti; Joseph H. Nadeau (J. Comput. Biol., 1997)

PReMod: a database of genome-wide mammalian cis-regulatory module predictions. - Vincent Ferretti; Christian Poitras; Dominique Bergeron; Benoit Coulombe; François Robert 001; Mathieu Blanchette (Nucleic Acids Res., 2007)

CaPSID: A bioinformatics platform for computational pathogen sequence identification in human genomes and transcriptomes. - Ivan Borozan; Shane Wilson; Paola Blanchette; Philippe Laflamme; Stuart N. Watt; Paul M. Krzyzanowski; Fabrice Sircoulomb; Robert Rottapel; Philip E. Branton; Vincent Ferretti (BMC Bioinform., 2012)

Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification. - Ivan Borozan; Stuart N. Watt; Vincent Ferretti (Bioinform., 2015)

CSSSCL: a python package that uses combined sequence similarity scores for accurate taxonomic classification of long and short sequence reads. - Ivan Borozan; Vincent Ferretti (Bioinform., 2016)

The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows. - Brian D. O'Connor; Denis Yuen; Vincent Chung; Andrew G. Duncan; Xiangkun Liu; Janice Patricia; Benedict Paten; Lincoln Stein; Vincent Ferretti (F1000Research, 2017)