A 3-D interactive editor for brain cortical sulcal anatomy labelling. - Vincent Frouin; Jean-François Mangin; Jean Régis; Bernard Bendriem (CBMS, 1994)

A MRF Based Random Graph Modelling the Human Cortical Topography. - Jean-François Mangin; Jean Régis; Isabelle Bloch; Vincent Frouin; Y. Samson; Jaime López-Krahe (CVRMed, 1995)

From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations. - Jean-François Mangin; Vincent Frouin; Isabelle Bloch; Jean Régis; Jaime López-Krahe (J. Math. Imaging Vis., 1995)

Differential features of cortical folds. - Anne Manceaux-Demiau; Jean-François Mangin; Jean Régis; Olivier Pizzato; Vincent Frouin (CVRMed, 1997)

Multiscale Measures in Linear Scale-Space for Characterizing Cerebral Functional Activations in 3D PET Difference Images. - Olivier Coulon; Isabelle Bloch; Vincent Frouin; Jean-François Mangin (Scale-Space, 1997)

Robust Brain Segmentation Using Histogram Scale-Space Analysis and Mathematical Morphology. - Jean-François Mangin; Olivier Coulon; Vincent Frouin (MICCAI, 1998)

Regularization of MR Diffusion Tensor Maps for Tracking Brain White Matter Bundles. - Cyril Poupon; Jean-François Mangin; Vincent Frouin; Jean Régis; Fabrice Poupon; M. Pachot-Clouard; Denis Le Bihan; Isabelle Bloch (MICCAI, 1998)

Multi-object Deformable Templates Dedicated to the Segmentation of Brain Deep Structures. - Fabrice Poupon; Jean-François Mangin; Dominique Hasboun; Cyril Poupon; Isabelle E. Magnin; Vincent Frouin (MICCAI, 1998)

Neural Network Based Learning of Local Compatibilities for Segment Grouping. - Denis Rivière; Jean-François Mangin; Jean-Marc Martinez; Florent Chavand; Vincent Frouin (SSPR/SPR, 1998)

Structural Group Analysis of Functional Maps. - Olivier Coulon; Jean-François Mangin; Jean-Baptiste Poline; Vincent Frouin; Isabelle Bloch (IPMI, 1999)

Inferring the Brain Connectivitiy from MR Diffusion Tensor Data. - Cyril Poupon; Chris A. Clark; Vincent Frouin; Denis Le Bihan; Isabelle Bloch; Jean-François Mangin (MICCAI, 1999)

Automatic Recognition of Cortical Sulci Using a Congregation of Neural Networks. - Denis Rivière; Jean-François Mangin; Dimitri Papadopoulos-Orfanos; Jean-Marc Martinez; Vincent Frouin; Jean Régis (MICCAI, 2000)

3D Regularisation and Segmentation of Factor Volumes to Process PET H2O Myocardial Perfusion Studies. - Frédérique Frouin; Paté Boubacar; Vincent Frouin; Alain De Cesare; Andrew Todd-Pokropek; Pascal Merlet; Alain Herment (FIMH, 2001)

Towards inference of human brain connectivity from MR diffusion tensor data. - Cyril Poupon; Jean-François Mangin; Chris A. Clark; Vincent Frouin; Jean Régis; Denis Le Bihan; Isabelle Bloch (Medical Image Anal., 2001)

Relational Graph Labelling Using Learning Techniques and Markov Random Fields. - Denis Rivière; Jean-François Mangin; Jean-Marc Martinez; Florence Tupin; Dimitri Papadopoulos-Orfanos; Vincent Frouin (ICPR (2), 2002)

Automatic recognition of cortical sulci of the human brain using a congregation of neural networks. - Denis Rivière; Jean-François Mangin; Dimitri Papadopoulos-Orfanos; Jean-Marc Martinez; Vincent Frouin; Jean Régis (Medical Image Anal., 2002)

In Vivo Detection of Striatal Dopamine Release during Reward: A PET Study with [11C]Raclopride and a Single Dynamic Scan Approach. - Sabina Pappatà; Stanislas Dehaene; Jean-Baptiste Poline; M. C. Gregoire; Antoinette Jobert; Jacques Delforge; Vincent Frouin; Michel Bottlaender; Frédéric Dollé; L. Di Giamberardino; André Syrota (NeuroImage, 2002)

Using 3D Non Rigid FFD-Based Method to Register post mortem 3D Histological Data and in vivo MRI of a Baboon Brain. - Thierry Delzescaux; Julien Dauguet; Françoise Condé; Renaud Maroy; Vincent Frouin (MICCAI (2), 2003)

Robust Inter-slice Intensity Normalization Using Histogram Scale-Space Analysis. - Julien Dauguet; Jean-François Mangin; Thierry Delzescaux; Vincent Frouin (MICCAI (1), 2004)

Learning Transcriptional Regulatory Networks with Evolutionary Algorithms Enhanced with Niching. - Cédric Auliac; Florence d'Alché-Buc; Vincent Frouin (WILF, 2007)

Grouping Levels of Exposure with Same Observable Effects before Class Prediction in Toxicogenomics. - Vincent Guillemot; Cathy Philippe; Arthur Tenenhaus; Jérôme Rollin; Xavier Gidrol; Vincent Frouin (BIOTECHNO, 2008)

Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset. - Cédric Auliac; Vincent Frouin; Xavier Gidrol; Florence d'Alché-Buc (BMC Bioinform., 2008)

Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: Application to unilateral visual stimulation. - Albertine Dubois; Anne-Sophie Hérard; Guillaume Flandin; Edouard Duchesnay; Laurent Besret; Vincent Frouin; Philippe Hantraye; Gilles Bonvento; Thierry Delzescaux (NeuroImage, 2008)

Segmentation of Rodent Whole-Body Dynamic PET Images: An Unsupervised Method Based on Voxel Dynamics. - Renaud Maroy; Raphaël Boisgard; Claude Comtat; Vincent Frouin; Pascal Cathier; Edouard Duchesnay; Frédéric Dollé; Peter E. Nielsen; Régine Trébossen; Bertrand Tavitian (IEEE Trans. Medical Imaging, 2008)

Segmentation of Anatomo-Functional 3D Post Mortem Data Using a MRI-Based 3D Digital Atlas: Transgenic Mouse Brains Study. - Jessica Lebenberg; Anne-Sophie Hérard; Albertine Dubois; Marc Dhenain; Philippe Hantraye; Vincent Frouin; Thierry Delzescaux (ISBI, 2009)

Imaging Genetics: Bio-Informatics and Bio-Statistics Challenges. - Jean-Baptiste Poline; Christophe Lalanne; Arthur Tenenhaus; Edouard Duchesnay; Bertrand Thirion; Vincent Frouin (COMPSTAT, 2010)

Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: An anatomofunctional transgenic mouse brain imaging study. - Jessica Lebenberg; Anne-Sophie Hérard; Albertine Dubois; Julien Dauguet; Vincent Frouin; Marc Dhenain; Philippe Hantraye; Thierry Delzescaux (NeuroImage, 2010)

Gene Association Networks from Microarray Data Using a Regularized Estimation of Partial Correlation Based on PLS Regression. - Arthur Tenenhaus; Vincent Guillemot; Xavier Gidrol; Vincent Frouin (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Discovering associations in high dimensional imaging-genetics data: A comparison study of dimension reduction and regularisation strategies combined with partial least squares. - Edith Le Floch; Philippe Pinel; Arthur Tenenhaus; Laura Trinchera; Jean-Baptiste Poline; Vincent Frouin; Edouard Duchesnay (ISBI, 2012)

PyXNAT: XNAT in Python. - Yannick Schwartz; Alexis Barbot; Benjamin Thyreau; Vincent Frouin; Gaël Varoquaux; Aditya Siram; Daniel S. Marcus; Jean-Baptiste Poline (Frontiers Neuroinformatics, 2012)

Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares. - Edith Le Floch; Vincent Guillemot; Vincent Frouin; Philippe Pinel; Christophe Lalanne; Laura Trinchera; Arthur Tenenhaus; Antonio Moreno; Monica Zilbovicius; Thomas Bourgeron; Stanislas Dehaene; Bertrand Thirion; et al. (NeuroImage, 2012)

Very large fMRI study using the IMAGEN database: Sensitivity-specificity and population effect modeling in relation to the underlying anatomy. - Benjamin Thyreau; Yannick Schwartz; Bertrand Thirion; Vincent Frouin; Eva Loth; Sabine Vollstädt-Klein; Tomás Paus; Eric Artiges; Patricia J. Conrod; Gunter Schumann; Robert A. Whelan; Jean-Baptiste Poline (NeuroImage, 2012)

Enhancing the Reproducibility of Group Analysis with Randomized Brain Parcellations. - Benoit Da Mota; Virgile Fritsch; Gaël Varoquaux; Vincent Frouin; Jean-Baptiste Poline; Bertrand Thirion (MICCAI (2), 2013)

Comparison of Features for Voxel-Based Analysis and Classification of Anatomical Neuroimaging Data. - Anne-Laure Fouque; Clara Fischer; Vincent Frouin; Philippe Ciuciu; Edouard Duchesnay (PRNI, 2013)

Robust Group-Level Inference in Neuroimaging Genetic Studies. - Virgile Fritsch; Benoit Da Mota; Gaël Varoquaux; Vincent Frouin; Eva Loth; Jean-Baptiste Poline; Bertrand Thirion (PRNI, 2013)

Toward global tractography. - Jean-François Mangin; Pierre Fillard; Yann Cointepas; Denis Le Bihan; Vincent Frouin; Cyril Poupon (NeuroImage, 2013)

Predictive support recovery with TV-Elastic Net penalty and logistic regression: An application to structural MRI. - Mathieu Dubois; Fouad Hadj-Selem; Tommy Löfstedt; Matthieu Perrot; Clara Fischer; Vincent Frouin; Edouard Duchesnay (PRNI, 2014)

Generic Machine Learning Pattern for Neuroimaging-Genetic Studies in the Cloud. - Benoit Da Mota; Radu Tudoran; Alexandru Costan; Gaël Varoquaux; Goetz Brasche; Patricia J. Conrod; Hervé Lemaître; Tomás Paus; Marcella Rietschel; Vincent Frouin; Jean-Baptiste Poline; Gabriel Antoniu; et al. (Frontiers Neuroinformatics, 2014)

Randomized parcellation based inference. - Benoit Da Mota; Virgile Fritsch; Gaël Varoquaux; Tobias Banaschewski; Gareth J. Barker; Arun L. W. Bokde; Uli Bromberg; Patricia J. Conrod; Jürgen Gallinat; Hugh Garavan; Jean-Luc Martinot; Frauke Nees; et al. (NeuroImage, 2014)

Nonlinear functional mapping of the human brain. - Nicholas A. Allgaier; Tobias Banaschewski; Gareth J. Barker; Arun L. W. Bokde; Josh C. Bongard; Uli Bromberg; Christian Büchel; Anna Cattrell; Patricia J. Conrod; Christopher M. Danforth; Sylvane Desrivières; Peter Sheridan Dodds; et al. (CoRR, 2015)

Kernel Generalized Canonical Correlation Analysis. - Arthur Tenenhaus; Cathy Philippe; Vincent Frouin (Comput. Stat. Data Anal., 2015)

Robust regression for large-scale neuroimaging studies. - Virgile Fritsch; Benoit Da Mota; Eva Loth; Gaël Varoquaux; Tobias Banaschewski; Gareth J. Barker; Arun L. W. Bokde; Rüdiger Brühl; Brigitte Butzek; Patricia J. Conrod; Herta Flor; Hugh Garavan; et al. (NeuroImage, 2015)

CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts. - Grégory Operto; Marie Chupin; Bénédicte Batrancourt; Marie Odile Habert; Olivier Colliot; Habib Benali; Cyril Poupon; Catherine Champseix; Christine Delmaire; Marie Sullivan; Denis Rivière; Mélanie Pélégrini-Issac; et al. (Neuroinformatics, 2016)

Regional study of the genetic influence on the sulcal pits. - Yann Le Guen; Guillaume Auzias; Ghislaine Dehaene-Lambertz; François Leroy; Jean-François Mangin; Edouard Duchesnay; Olivier Coulon; Vincent Frouin (ISBI, 2017)

Neuroimaging, Genetics, and Clinical Data Sharing in Python Using the CubicWeb Framework. - Antoine Grigis; David Goyard; Robin Cherbonnier; Thomas Gareau; Dimitri Papadopoulos-Orfanos; Nicolas Chauvat; Adrien Di Mascio; Gunter Schumann; Will Spooren; Declan G. M. Murphy; Vincent Frouin (Frontiers Neuroinformatics, 2017)

The Brainomics/Localizer database. - Dimitri Papadopoulos-Orfanos; Vincent Michel; Yannick Schwartz; Philippe Pinel; Antonio Moreno; Denis Le Bihan; Vincent Frouin (NeuroImage, 2017)

A study of feasibility for genome-wide haplotype association of complex traits in imaging genetics. - Slim Karkar; Yann Le Guen; Cathy Philippe; Claire Dandine-Roulland; Morgane Pierre-Jean; Jean-François Mangin; Edith Le Floch; Vincent Frouin (BIBM, 2018)

The chaotic morphology of the left superior temporal sulcus is genetically constrained. - Yann Le Guen; François Leroy; Guillaume Auzias; Denis Rivière; Antoine Grigis; Jean-François Mangin; Olivier Coulon; Ghislaine Dehaene-Lambertz; Vincent Frouin (NeuroImage, 2018)

Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology. - Laura O'Halloran; Zhipeng Cao 004; Kathy L. Ruddy; Lee Jollans; Matthew D. Albaugh; Andrea Aleni; Alexandra S. Potter; Nigel Vahey; Tobias Banaschewski; Sarah Hohmann; Arun L. W. Bokde; Uli Bromberg; et al. (NeuroImage, 2018)

Continuation of Nesterov's Smoothing for Regression With Structured Sparsity in High-Dimensional Neuroimaging. - Fouad Hadj-Selem; Tommy Löfstedt; Elvis Dohmatob; Vincent Frouin; Mathieu Dubois; Vincent Guillemot; Edouard Duchesnay (IEEE Trans. Medical Imaging, 2018)

Structured Sparse Principal Components Analysis With the TV-Elastic Net Penalty. - Amicie de Pierrefeu; Tommy Löfstedt; Fouad Hadj-Selem; Mathieu Dubois; Renaud Jardri; Thomas Fovet; Philippe Ciuciu; Vincent Frouin; Edouard Duchesnay (IEEE Trans. Medical Imaging, 2018)

Can Structural MRI Radiomics Predict DIPG Histone H3 Mutation and Patient Overall Survival at Diagnosis Time? - Jessica Goya-Outi; Raphael Calmon; Fanny Orlhac; Cathy Philippe; Nathalie Boddaert; Stéphanie Puget; Irène Buvat; Vincent Frouin; Jacques Grill; Frédérique Frouin (BHI, 2019)

Heritability of surface area and cortical thickness: a comparison between the Human Connectome Project and the UK Biobank dataset. - Yann Le Guen; Slim Karkar; Antoine Grigis; Cathy Philippe; Jean-François Mangin; Vincent Frouin (ISBI, 2019)

Network Regularization in Imaging Genetics Improves Prediction Performances and Model Interpretability on Alzheimer's Disease. - Nicolas Guigui; Cathy Philippe; Arnaud Gloaguen; Slim Karkar; Vincent Guillemot; Tommy Löfstedt; Vincent Frouin (ISBI, 2019)

Multivariate Haplotype Analysis Of 96 Sulci Opening For 15, 612 UK-Biobank Sujects. - Slim Karkar; Arnaud Gloaguen; Yann Le Guen; Morgane Pierre-Jean; Claire Dandine-Roulland; Edith Le Floch; Cathy Philippe; Arthur Tenenhaus; Vincent Frouin (ISBI, 2019)

Sex effects on structural maturation of the limbic system and outcomes on emotional regulation during adolescence. - Pauline Bezivin Frere; Nora C. Vetter; Eric Artiges; Irina Filippi; Rubén Miranda; Hélène Vulser; Marie-Laure Paillère-Martinot; Veronika Ziesch; Patricia J. Conrod; Anna Cattrell; Henrik Walter; Jürgen Gallinat; et al. (NeuroImage, 2020)

Impact of ComBat and a Multi-Model approach to deal with multi-scanner and missing MRI data in a small cohort study. Application to H3K27M mutation prediction in patients with DIPG. - Fahad Khalid; Jessica Goya-Outi; Vincent Frouin; Nathalie Boddaert; Jacques Grill; Frédérique Frouin (EMBC, 2021)

Prediction Performance of Radiomic Features When Obtained using an Object Detection Framework. - Hamza Chegraoui; Amine Rebei; Cathy Philippe; Vincent Frouin (ISBI, 2021)

Contribution Of Imaging-Genetics To Overall Survival Prediction Compared To Clinical Status For Pcnsl Patients. - Amine Rebei; Agusti Alentorn; Hamza Chegraoui; Vincent Frouin; Cathy Philippe (ISBI, 2021)

Interpretable Signature of Consciousness in Resting-State Functional Network Brain Activity. - Antoine Grigis; Chloé Gomez; Vincent Frouin; Lynn Uhrig; Béchir Jarraya (MICCAI (1), 2022)

OpenBHB: a Large-Scale Multi-Site Brain MRI Data-set for Age Prediction and Debiasing. - Benoit Dufumier; Antoine Grigis; Julie Victor; Corentin Ambroise; Vincent Frouin; Edouard Duchesnay (NeuroImage, 2022)

The genetic architecture of language functional connectivity. - Yasmina Mekki; Vincent Guillemot; Hervé Lemaître; Amaia Carrión-Castillo; Stephanie J. Forkel; Vincent Frouin; Cathy Philippe (NeuroImage, 2022)

OpenBHB: a Multi-Site Brain MRI Dataset for Age Prediction and Debiasing. - Benoit Dufumier; Antoine Grigis; Julie Victor; Corentin Ambroise; Vincent Frouin; Edouard Duchesnay (IEEE DataPort, 2022)

Multi-View Variational Autoencoders Allow for Interpretability Leveraging Digital Avatars: Application to the HBN Cohort. - Corentin Ambroise; Antoine Grigis; Edouard Duchesnay; Vincent Frouin (ISBI, 2023)

MixUp Brain-Cortical Augmentations in Self-supervised Learning. - Corentin Ambroise; Vincent Frouin; Benoit Dufumier; Edouard Duchesnay; Antoine Grigis (MLCN@MICCAI, 2023)

Interpretable automatic detection of incomplete hippocampal inversions using anatomical criteria. - Lisa Hemforth; Claire Cury; Vincent Frouin; Sylvane Desrivières; Antoine Grigis; Hugh Garavan; Rüdiger Brühl; Jean-Luc Martinot; Marie-Laure Paillère-Martinot; Eric Artiges; Luise Poustka; Sarah Hohmann; et al. (Image Processing, 2023)

Genetic variations within human gained enhancer elements affect human brain sulcal morphology. - Hervé Lemaître; Yann Le Guen; Amanda K. Tilot; Jason L. Stein; Cathy Philippe; Jean-François Mangin; Simon E. Fisher; Vincent Frouin (NeuroImage, 2023)

Integrating multiomics and prior knowledge: a study of the Graphnet penalty impact. - Hamza Chegraoui; Vincent Guillemot; Amine Rebei; Arnaud Gloaguen; Jacques Grill; Cathy Philippe; Vincent Frouin (Bioinform., 2023)

Structural-Connectivity-Based Individual Parcellations Improve Regional Cortical Thickness Heritability Study. - Clément Langlet; Denis Rivière; Antoine Grigis; Vincent Frouin; Jean-François Mangin (ISBI, 2024)

Towards a Foundation Model for Cortical Folding. - Julien Laval; Joël Chavas; Vanessa Troiani; William Snyder; Marisa Patti; Mylène Moyal; Marion Plaze; Arnaud Cachia; Zhongyi Sun 003; Vincent Frouin; Pietro Gori; Denis Rivière; et al. (MLCN@MICCAI, 2024)

Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts. - Lisa Hemforth; Baptiste Couvy-Duchesne; Kevin De Matos; Camille Brianceau; Matthieu Joulot; Tobias Banaschewski; Arun L. W. Bokde; Sylvane Desrivières; Herta Flor; Antoine Grigis; Hugh Garavan; Penny Gowland; et al. (CoRR, 2024)

Towards a Better Understanding of the Genetics of the Human Cortical Folding. - Antoine Dufournet; Joël Chavas; Julien Laval; Denis Rivière; Vincent Frouin; Jean-François Mangin (ISBI, 2025)