Unidimensional Search for Solving Continuous High-Dimensional Optimization Problems. - Vincent Gardeux; Rachid Chelouah; Patrick Siarry; Fred W. Glover (ISDA, 2009)

EM323: a line search based algorithm for solving high-dimensional continuous non-linear optimization problems. - Vincent Gardeux; Rachid Chelouah; Patrick Siarry; Fred W. Glover (Soft Comput., 2011)

Conception d'heuristiques d'optimisation pour les problèmes de grande dimension : application à l'analyse de données de puces à ADN. (Heuristics implementation for high-dimensional problem optimization : application in microarray data analysis). - Vincent Gardeux (2011)

From Swarm Art Toward Ecosystem Art. - Stefan Bornhofen; Vincent Gardeux; Andréa Machizaud (Int. J. Swarm Intell. Res., 2012)

GA-KDE-Bayes: an evolutionary wrapper method based on non-parametric density estimation applied to bioinformatics problems. - Maria Fernanda B. Wanderley; Vincent Gardeux; René Natowicz; Antônio de Pádua Braga (ESANN, 2013)

Research and applications: The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools. - Andrew D. Boyd; Jianrong John Li; Mike D. Burton; Michael Jonen; Vincent Gardeux; Ikbel Achour; Roger Q. Luo; Ilir Zenku; Neil Bahroos; Stephen B. Brown; Terry L. Vanden Hoek; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2013)

COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. - Young Ji Lee; Andrew D. Boyd; Jianrong Li; Vincent Gardeux; Colleen Kenost; Donald Saner; Haiquan Li; Ivo L. Abraham; Jerry A. Krishnan; Yves A. Lussier (AMIA, 2014)

ARTS: automated randomization of multiple traits for study design. - Mark Maienschein-Cline; Zhengdeng Lei; Vincent Gardeux; Taimur Abbasi; Roberto F. Machado; Victor Gordeuk; Ankit A. Desai; Santosh Saraf; Neil Bahroos; Yves A. Lussier (Bioinform., 2014)

'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. - Vincent Gardeux; Ikbel Achour; Jianrong Li; Mark Maienschein-Cline; Haiquan Li; Lorenzo L. Pesce; Gurunadh Parinandi; Neil Bahroos; Robert Winn; Ian T. Foster; Joe G. N. Garcia; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2014)

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival. - A. Grant Schissler; Vincent Gardeux; Qike Li; Ikbel Achour; Haiquan Li; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2015)

Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes. - Vincent Gardeux; Anthony Bosco; Jianrong Li; Marilyn J. Halonen; Daniel Jackson 003; Fernando D. Martinez; Yves A. Lussier (J. Biomed. Informatics, 2015)

eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. - Haiquan Li; Nima Pouladi; Ikbel Achour; Vincent Gardeux; Jianrong Li; Qike Li; Hao Helen Zhang; Fernando D. Martinez; Joe G. N. 'Skip' Garcia; Yves A. Lussier (J. Biomed. Informatics, 2015)

Adaptive pattern search for large-scale optimization. - Vincent Gardeux; Mahamed G. H. Omran; Rachid Chelouah; Patrick Siarry; Fred W. Glover (Appl. Intell., 2017)

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data. - Vincent Gardeux; Fabrice P. A. David; Adrian Shajkofci; Petra C. Schwalie; Bart Deplancke (Bioinform., 2017)

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. - Vincent Gardeux; Joanne Berghout; Ikbel Achour; A. Grant Schissler; Qike Li; Colleen Kenost; Jianrong Li; Yuan Shang; Anthony Bosco; Donald Saner; Marilyn J. Halonen; Daniel Jackson 003; et al. (J. Am. Medical Informatics Assoc., 2017)

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. - Qike Li; A. Grant Schissler; Vincent Gardeux; Joanne Berghout; Ikbel Achour; Colleen Kenost; Haiquan Li; Hao Helen Zhang; Yves A. Lussier (J. Biomed. Informatics, 2017)

ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses. - Fabrice P. A. David; Maria Litovchenko; Bart Deplancke; Vincent Gardeux (Nucleic Acids Res., 2020)

FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format. - Rahi Navelkar; Andrea Cosolo; Bogdan Bintu; Yubao Cheng; Vincent Gardeux; Silvia Gutnik; Taihei Fujimori; Antonina Hafner; Atishay Jay; Bojing Blair Jia; Adam Paul Jussila; Gerard Llimos; et al. (CoRR, 2025)