COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures. - Jason Vertrees; Phillip Barritt; Steve Whitten; Vincent J. Hilser (Bioinform., 2005)

Investigating Homology between Proteins using Energetic Profiles. - James O. Wrabl; Vincent J. Hilser (PLoS Comput. Biol., 2010)

A Horizontal Alignment Tool for Numerical Trend Discovery in Sequence Data: Application to Protein Hydropathy. - Omar Hadzipasic; James O. Wrabl; Vincent J. Hilser (PLoS Comput. Biol., 2013)