Reaction Motifs in Metabolic Networks. - Vincent Lacroix; Cristina G. Fernandes; Marie-France Sagot (WABI, 2005)

Metabolic network visualization using constraint planar graph drawing algorithm. - Romain Bourqui; David Auber; Vincent Lacroix; Fabien Jourdan (IV, 2006)

Motif Search in Graphs: Application to Metabolic Networks. - Vincent Lacroix; Cristina G. Fernandes; Marie-France Sagot (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

Metabolic network visualization eliminating node redundance and preserving metabolic pathways. - Romain Bourqui; Ludovic Cottret; Vincent Lacroix; David Auber; Patrick Mary; Marie-France Sagot; Fabien Jourdan (BMC Syst. Biol., 2007)

Identification de motifs dans les réseaux métaboliques. (Motif identification in metabolic networks). - Vincent Lacroix (2007)

Exact Transcriptome Reconstruction from Short Sequence Reads. - Vincent Lacroix; Michael Sammeth; Roderic Guigó; Anne Bergeron (WABI, 2008)

An Introduction to Metabolic Networks and Their Structural Analysis. - Vincent Lacroix; Ludovic Cottret; Patricia Thébault; Marie-France Sagot (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Modes and cuts in metabolic networks: Complexity and algorithms. - Vicente Acuña; Flavio Chierichetti; Vincent Lacroix; Alberto Marchetti-Spaccamela; Marie-France Sagot; Leen Stougie (Biosyst., 2009)

Assessing the Exceptionality of Coloured Motifs in Networks. - Sophie Schbath; Vincent Lacroix; Marie-France Sagot (EURASIP J. Bioinform. Syst. Biol., 2009)

Identifying SNPs without a Reference Genome by Comparing Raw Reads. - Pierre Peterlongo; Nicolas Schnel; Nadia Pisanti; Marie-France Sagot; Vincent Lacroix (SPIRE, 2010)

Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms. - Paulo Vieira Milreu; Vicente Acuña; Etienne Birmelé; Pierluigi Crescenzi; Alberto Marchetti-Spaccamela; Marie-France Sagot; Leen Stougie; Vincent Lacroix (WABI, 2010)

Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone. - Alexandre S. Freire; Vicente Acuña; Pilu Crescenzi; Carlos Eduardo Ferreira; Vincent Lacroix; Paulo Vieira Milreu; Eduardo Moreno 001; Marie-France Sagot (ISCO, 2012)

Efficient Bubble Enumeration in Directed Graphs. - Etienne Birmelé; Pierluigi Crescenzi; Rui A. Ferreira; Roberto Grossi; Vincent Lacroix; Andrea Marino 001; Nadia Pisanti; Gustavo Akio Tominaga Sacomoto; Marie-France Sagot (SPIRE, 2012)

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. - Gustavo Akio Tominaga Sacomoto; Janice Kielbassa; Rayan Chikhi; Raluca Uricaru; Pavlos Antoniou; Marie-France Sagot; Pierre Peterlongo; Vincent Lacroix (BMC Bioinform., 2012)

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. - Vicente Acuña; Etienne Birmelé; Ludovic Cottret; Pierluigi Crescenzi; Fabien Jourdan; Vincent Lacroix; Alberto Marchetti-Spaccamela; Andrea Marino 001; Paulo Vieira Milreu; Marie-France Sagot; Leen Stougie (Theor. Comput. Sci., 2012)

A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data. - Gustavo Sacomoto; Vincent Lacroix; Marie-France Sagot (WABI, 2013)

Telling Stories Fast. - Michele Borassi; Pierluigi Crescenzi; Vincent Lacroix; Andrea Marino 001; Marie-France Sagot; Paulo Vieira Milreu (SEA, 2013)

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. - Milana Frenkel-Morgenstern; Alessandro Gorohovski; Vincent Lacroix; Mark F. Rogers; Kristina Ibáñez; Cesar Boullosa; Eduardo Andrés León; Asa Ben-Hur; Alfonso Valencia (Nucleic Acids Res., 2013)

Navigating in a Sea of Repeats in RNA-seq without Drowning. - Gustavo Sacomoto; Blerina Sinaimeri; Camille Marchet; Vincent Miele; Marie-France Sagot; Vincent Lacroix (WABI, 2014)

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. - Paulo Vieira Milreu; Cecilia Coimbra Klein; Ludovic Cottret; Vicente Acuña; Etienne Birmelé; Michele Borassi; Christophe Junot; Alberto Marchetti-Spaccamela; Andrea Marino 001; Leen Stougie; Fabien Jourdan; Pierluigi Crescenzi; et al. (Bioinform., 2014)

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs. - Gustavo Sacomoto; Vincent Lacroix; Marie-France Sagot (Algorithms Mol. Biol., 2015)

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. - Leandro Lima; Blerina Sinaimeri; Gustavo Sacomoto; Hélène Lopez-Maestre; Camille Marchet; Vincent Miele; Marie-France Sagot; Vincent Lacroix (Algorithms Mol. Biol., 2017)

Modelling Dynamic Data Structures with the B Method. - Frédéric Badeau; Vincent Lacroix; Vincent Monfort; Laurent Voisin; Christophe Métayer (ABZ, 2018)

De novo analysis of splicing from RNA-seq data: models, algorithms and applications. - Vincent Lacroix (2023)