Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-β Signaling. - Jean Coquet; Nathalie Théret; Vincent Legagneux; Olivier Dameron (CMSB, 2017)

A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma. - Maxime Folschette; Vincent Legagneux; Arnaud Poret; Lokmane Chebouba; Carito Guziolowski; Nathalie Théret (BMC Bioinform., 2020)

A rule-based multiscale model of hepatic stellate cell plasticity: Critical role of the inactivation loop in fibrosis progression. - Matthieu Bouguéon; Vincent Legagneux; Octave Hazard; Jérémy Bomo; Anne Siegel; Jérôme Feret; Nathalie Théret (PLoS Comput. Biol., 2024)