ArrayD: A general purpose software for Microarray design. - Anu Sharma; Gyan Prakash Srivastava; Vineet K. Sharma; Srinivasan Ramachandran (BMC Bioinform., 2004)

MetaBioME: a database to explore commercially useful enzymes in metagenomic datasets. - Vineet K. Sharma; Naveen Kumar 010; Tulika Prakash; Todd D. Taylor (Nucleic Acids Res., 2010)

MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets. - Ankit Gupta; Aditya S. Malwe; Gopal N. Srivastava; Parikshit Thoudam; Keshav Hibare; Vineet K. Sharma (BMC Bioinform., 2022)

CRCpred: An AI-ML tool for colorectal cancer prediction using gut microbiome. - Deepika Pateriya; Aditya S. Malwe; Vineet K. Sharma (Comput. Biol. Medicine, 2025)