BioBuilder as a database development and functional annotation platform for proteins. - J. Daniel Navarro; Naveen Talreja; Suraj Peri; B. M. Vrushabendra; B. P. Rashmi; N. Padma; Vineeth Surendranath; Chandra Kiran Jonnalagadda; P. S. Kousthub; Nandan Deshpande; K. Shanker; Akhilesh Pandey (BMC Bioinform., 2004)

Human protein reference database as a discovery resource for proteomics. - Suraj Peri; J. Daniel Navarro; Troels Z. Kristiansen; Ramars Amanchy; Vineeth Surendranath; Babylakshmi Muthusamy; T. K. B. Gandhi; K. N. Chandrika; Nandan Deshpande; Shubha Suresh; B. P. Rashmi; K. Shanker; et al. (Nucleic Acids Res., 2004)

ProFAT: a web-based tool for the functional annotation of protein sequences. - Charles Richard Bradshaw; Vineeth Surendranath; Bianca Habermann (BMC Bioinform., 2006)

SeLOX - a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems. - Vineeth Surendranath; Janet Chusainow; Joachim Hauber; Frank Buchholz; Bianca Habermann (Nucleic Acids Res., 2010)

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. - Ines Wagner; Michael Volkmer; Malvika Sharan; Jose M. Villaveces; Felix Oswald; Vineeth Surendranath; Bianca Habermann (BMC Bioinform., 2014)