DyNAVacS: an integrative tool for optimized DNA vaccine design. - Nagarajan Harish; Rekha Gupta; Parul Agarwal; Vinod Scaria; Beena Pillai (Nucleic Acids Res., 2006)

Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. - Vinod Scaria; Manoj Hariharan; Amit Arora; Souvik Maiti (Nucleic Acids Res., 2006)

dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. - Manoj Hariharan; Vinod Scaria; Samir K. Brahmachari (BMC Bioinform., 2009)

MitoLSDB: The Human Mitochondrial Locus Specific Database. - Shamna Mole; Saakshi Jalali; Vinod Scaria; Anshu Bhardwaj (AIMM, 2012)

Computational analysis and predictive modeling of small molecule modulators of microRNA. - Salma Jamal; Vinita Periwal; Vinod Scaria; et al. (J. Cheminformatics, 2012)

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. - Deeksha Bhartiya; Koustav Pal; Sourav Ghosh; Shruti Kapoor; Saakshi Jalali; Bharat Panwar; Sakshi Jain; Satish Sati; Shantanu Sengupta; Chetana Sachidanandan; Gajendra Pal Singh Raghava; Sridhar Sivasubbu; et al. (Database J. Biol. Databases Curation, 2013)

Predictive modeling of anti-malarial molecules inhibiting apicoplast formation. - Salma Jamal; Vinita Periwal; Vinod Scaria (BMC Bioinform., 2013)

Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana. - Salma Jamal; Vinod Scaria (BMC Bioinform., 2013)

tbvar: a comprehensive genome variation resource for Mycobacterium tuberculosis. - Kandarp Rakeshkumar Joshi; Heena Dhiman; Vinod Scaria (Database J. Biol. Databases Curation, 2014)

HGV&TB: a comprehensive online resource on human genes and genetic variants associated with tuberculosis. - Ruchika Sahajpal; Gaurav Kandoi; Heena Dhiman; Sweety Raj; Vinod Scaria; Deeksha Bhartiya; Yasha Hasija (Database J. Biol. Databases Curation, 2014)

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. - Meghna Singh; Deeksha Bhartiya; Jayant Maini; Meenakshi Sharma; Angom Ramcharan Singh; Subburaj Kadarkaraisamy; Rajiv Rana; Ankit Sabharwal; Srishti Nanda; Aravindhakshan Ramachandran; Ashish Mittal; Shruti Kapoor; et al. (Database J. Biol. Databases Curation, 2014)

Computational approaches towards understanding human long non-coding RNA biology. - Saakshi Jalali; Shruti Kapoor; Ambily Sivadas; Deeksha Bhartiya; Vinod Scaria (Bioinform., 2015)

Insights into structural variations and genome rearrangements in prokaryotic genomes. - Vinita Periwal; Vinod Scaria (Bioinform., 2015)

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes. - Judith Mary Hariprakash; Shamsudheen Karuthedath Vellarikkal; Ankit Verma; Anop Singh Ranawat; Rijith Jayarajan; Rowmika Ravi; Anoop Kumar; Vishal Dixit; Ambily Sivadas; Atul Kumar Kashyap; Vigneshwar Senthivel; Paras Sehgal; et al. (Database J. Biol. Databases Curation, 2018)

Machine learning and data mining techniques for medical complex data analysis. - Hamid Alinejad-Rokny; Esmaeil Sadroddiny; Vinod Scaria (Neurocomputing, 2018)

Circad: a comprehensive manually curated resource of circular RNA associated with diseases. - Mercy Rophina; Disha Sharma; Mukta Poojary; Vinod Scaria (Database J. Biol. Databases Curation, 2020)

MUSTARD - a comprehensive resource of mutation-specific therapies in cancer. - Gauri S. Mittal; Anu R. I; Aastha Vatsyayan; Kavita Pandhare; Vinod Scaria (Database J. Biol. Databases Curation, 2021)

ESC: a comprehensive resource for SARS-CoV-2 immune escape variants. - Mercy Rophina; Kavita Pandhare; Afra Shamnath; Mohamed Imran; Bani Jolly; Vinod Scaria (Nucleic Acids Res., 2022)

Spectrum of rare and common mitochondrial DNA variations from 1029 whole genomes of self-declared healthy individuals from India. - Vishu Gupta; Bani Jolly; Rahul C. Bhoyar; Mohit Kumar Divakar; Abhinav Jain; Anushree Mishra; Vigneshwar Senthivel; Mohamed Imran; Vinod Scaria; Sridhar Sivasubbu (Comput. Biol. Chem., 2024)