Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model. - Martin Ehler; Vinodh N. Rajapakse; Barry Zeeberg; Brian P. Brooks; Jacob D. Brown; Wojciech Czaja; Robert F. Bonner (ISBRA, 2010)

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis. - Barry Zeeberg; Hongfang Liu; Ari B. Kahn; Martin Ehler; Vinodh N. Rajapakse; Robert F. Bonner; Jacob D. Brown; Brian P. Brooks; Vladimir L. Larionov; William C. Reinhold; John N. Weinstein; Yves Pommier (BMC Bioinform., 2011)

Predicting expression-related features of chromosomal domain organization with network-structured analysis of gene expression and chromosomal location. - Vinodh N. Rajapakse; Wojciech Czaja; Yves Pommier; William C. Reinhold; Sudhir Varma (BCB, 2012)

Data Representation for Learning and Information Fusion in Bioinformatics. - Vinodh N. Rajapakse (2013)

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R. - Augustin Luna; Vinodh N. Rajapakse; Fabricio G. Sousa; Jianjiong Gao; Nikolaus Schultz; Sudhir Varma; William C. Reinhold; Chris Sander; Yves Pommier (Bioinform., 2016)

CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics. - Augustin Luna; Fathi Elloumi; Sudhir Varma; Yanghsin Wang; Vinodh N. Rajapakse; Mirit I. Aladjem; Jacques Robert; Chris Sander; Yves Pommier; William C. Reinhold (Nucleic Acids Res., 2021)