PyGNA: a unified framework for geneset network analysis. - Viola Fanfani; Fabio Cassano; Giovanni Stracquadanio (BMC Bioinform., 2020)

BONOBO: Bayesian Optimized Sample-Specific Networks Obtained by Omics Data. - Enakshi Saha; Viola Fanfani; Panagiotis Mandros; Marouen Ben Guebila; Jonas Fischer; Katherine H. Shutta; Kimberly Glass; Dawn L. DeMeo; Camila Miranda Lopes-Ramos; John Quackenbush (RECOMB, 2024)