A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. - David A. Bader; Vipin Sachdeva (PDCS, 2005)

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. - David A. Bader; Vipin Sachdeva (CSB Workshops, 2005)

Poster reception - Pairwise alignments on the cell processor. - Vipin Sachdeva; Michael Kistler; Evan Speight (SC, 2006)

Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture. - Vipin Sachdeva; Evan Speight; Mark W. Stephenson; Lei Chen (IISWC, 2007)

Exploring the viability of the Cell Broadband Engine for bioinformatics applications. - Vipin Sachdeva; Michael Kistler; Evan Speight; Tzy-Hwa Kathy Tzeng (Parallel Comput., 2008)

Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures. - Vipin Sachdeva; Douglas M. Freimuth; Chris Mueller (ICCS (1), 2009)

Enabling Bioinformatics Algorithms on the Cell/B.E. Processor. - Vipin Sachdeva; Michael Kistler; Tzy-Hwa Kathy Tzeng (Scientific Computing with Multicore and Accelerators, 2010)

Evaluating Cell/B.E software cache for ClustalW. - Vipin Sachdeva; Michael Kistler; David A. Bader (ISCAS, 2010)

p_2Matlab: Productive Parallel Matlab for the Exascale. - Vipin Sachdeva (IPDPS Workshops, 2011)

Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation. - Timothy J. Tautges; Jason Kraftcheck; Nathan Bertram; Vipin Sachdeva; John Magerlein (IPDPS Workshops, 2012)

Enabling High-Performance Computing as a Service. - Moustafa AbdelBaky; Manish Parashar; Hyunjoo Kim; Kirk E. Jordan; Vipin Sachdeva; James C. Sexton; Hani Jamjoom; Zon-Yin Shae; Gergina Pencheva; Reza Tavakoli; Mary F. Wheeler (Computer, 2012)

Coupling a Basin Modeling and a Seismic Code using MOAB. - Mi Yan; Kirk E. Jordan; Dinesh K. Kaushik; Michael Perrone; Vipin Sachdeva; Timothy J. Tautges; John Magerlein (ICCS, 2012)

Determination of performance characteristics of scientific applications on IBM Blue Gene/Q. - Constantinos Evangelinos; Robert Walkup; Vipin Sachdeva; Kirk E. Jordan; Hormozd Gahvari; I-Hsin Chung; Michael P. Perrone; Ligang Lu; Lurng-Kuo Liu; Karen A. Magerlein (IBM J. Res. Dev., 2013)

K-mer clustering algorithm using a MapReduce approach. - Chang Sik Kim; Martyn D. Winn; Vipin Sachdeva; Kirk E. Jordan (BIBM, 2014)

Exploring HPC-based scientific software as a service using CometCloud. - Moustafa AbdelBaky; Javier Diaz Montes; Michael Johnston; Vipin Sachdeva; Richard L. Anderson 003; Kirk E. Jordan; Manish Parashar (CollaborateCom, 2014)

Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. - Vipin Sachdeva; Chang Sik Kim; Kirk E. Jordan; Martyn D. Winn (IPDPS Workshops, 2014)

A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. - Vipin Sachdeva; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2016)

OpenCL for HPC with FPGAs: Case study in molecular electrostatics. - Chen Yang 010; Jiayi Sheng; Rushi Patel; Ahmed Sanaullah; Vipin Sachdeva; Martin C. Herbordt (HPEC, 2017)

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. - Chang Sik Kim; Martyn D. Winn; Vipin Sachdeva; Kirk E. Jordan (BMC Bioinform., 2017)

OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution. - Yu-Hang Tang; Lu Lu 010; He Li; Constantinos Evangelinos; Leopold Grinberg; Vipin Sachdeva; George E. Karniadakis (CoRR, 2017)

Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. - Chen Yang 010; Tong Geng; Tianqi Wang; Charles Lin; Jiayi Sheng; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (ASAP, 2019)

Fully integrated FPGA molecular dynamics simulations. - Chen Yang 010; Tong Geng; Tianqi Wang; Rushi Patel; Qingqing Xiong; Ahmed Sanaullah; Chunshu Wu; Jiayi Sheng; Charles Lin; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (SC, 2019)

Fully Integrated On-FPGA Molecular Dynamics Simulations. - Chen Yang 010; Tong Geng; Tianqi Wang; Rushi Patel; Qingqing Xiong; Ahmed Sanaullah; Jiayi Sheng; Charles Lin; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (CoRR, 2019)

Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. - Carlo Pascoe; Lawrence C. Stewart; Brian W. Sherman; Vipin Sachdeva; Martin C. Herbordt (HPEC, 2020)

A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. - Chunshu Wu; Tong Geng; Chen Yang 010; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (HPEC, 2020)

An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. - Lawrence C. Stewart; Carlo Pascoe; Brian W. Sherman; Martin C. Herbordt; Vipin Sachdeva (CoRR, 2020)

Efficient Parallel Algorithms for error correction and transcriptome assembly of biological sequences. - Vipin Sachdeva (2020)

Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. - Lawrence C. Stewart; Carlo Pascoe; Emery Davis; Brian W. Sherman; Martin C. Herbordt; Vipin Sachdeva (FCCM, 2021)

Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. - Chunshu Wu; Tong Geng; Sahan Bandara; Chen Yang 010; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (FCCM, 2021)

System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. - Chunshu Wu; Sahan Bandara; Tong Geng; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (HPEC, 2021)

Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. - Chunshu Wu; Sahan Bandara; Tong Geng; Anqi Guo; Pouya Haghi; Vipin Sachdeva; Woody Sherman; Martin C. Herbordt (FPL, 2022)