Hypertrophy and/or Hyperplasia: Dynamics of Adipose Tissue Growth. - Junghyo Jo; Oksana Gavrilova; Stephanie Pack; William Jou; Shawn Mullen; Anne E. Sumner; Samuel W. Cushman; Vipul Periwal (PLoS Comput. Biol., 2009)

A Network Characteristic That Correlates Environmental and Genetic Robustness. - Zeina Shreif; Vipul Periwal (PLoS Comput. Biol., 2014)

The Beta Cell in Its Cluster: Stochastic Graphs of Beta Cell Connectivity in the Islets of Langerhans. - Deborah A. Striegel; Manami Hara; Vipul Periwal (PLoS Comput. Biol., 2015)

Block network mapping approach to quantitative trait locus analysis. - Zeina Shreif; Daniel M. Gatti; Vipul Periwal (BMC Bioinform., 2016)

Inverse Ising inference from high-temperature re-weighting of observations. - Junghyo Jo; Danh-Tai Hoang; Vipul Periwal (CoRR, 2019)

A mathematical model of calcium dynamics: Obesity and mitochondria-associated ER membranes. - Jung Min Han; Vipul Periwal (PLoS Comput. Biol., 2019)

Dory: Overcoming Barriers to Computing Persistent Homology. - Manu Aggarwal; Vipul Periwal (CoRR, 2021)

Tight basis cycle representatives for persistent homology of large data sets. - Manu Aggarwal; Vipul Periwal (CoRR, 2022)

Tight basis cycle representatives for persistent homology of large biological data sets. - Manu Aggarwal; Vipul Periwal (PLoS Comput. Biol., 2023)

Geometric and topological characterization of the cytoarchitecture of islets of Langerhans. - Manu Aggarwal; Deborah A. Striegel; Manami Hara; Vipul Periwal (PLoS Comput. Biol., 2023)

Annealing approach to root-finding. - Junghyo Jo; Alexandre Wagemakers; Vipul Periwal (CoRR, 2024)

Dory: Computation of persistence diagrams up to dimension two for Vietoris-Rips filtrations of large data sets. - Manu Aggarwal; Vipul Periwal (J. Comput. Sci., 2024)

Multiplicative Learning. - Han Kim; Hyungjoon Soh; Vipul Periwal; Junghyo Jo (CoRR, 2025)

Efficient and stable derivative-free Steffensen algorithm for root finding. - Alexandre Wagemakers; Vipul Periwal (CoRR, 2025)