Exponential Hermite splines for the analysis of biomedical images. - Virginie Uhlmann; Ricard Delgado-Gonzalo; Costanza Conti; Lucia Romani; Michael Unser (ICASSP, 2014)

VOW: Variance-optimal wavelets for the steerable pyramid. - Pedram Pad; Virginie Uhlmann; Michael Unser (ICIP, 2014)

Snakes with tangent-based control and energies for bioimage analysis. - Virginie Uhlmann; Ricard Delgado-Gonzalo; Michael Unser (ISBI, 2014)

Tip-seeking active contours for bioimage segmentation. - Virginie Uhlmann; Michael Unser (ISBI, 2015)

Snakes on a Plane: A perfect snap for bioimage analysis. - Ricard Delgado-Gonzalo; Virginie Uhlmann; Daniel Schmitter; Michael Unser (IEEE Signal Process. Mag., 2015)

Efficient Shape Priors for Spline-Based Snakes. - Ricard Delgado-Gonzalo; Daniel Schmitter; Virginie Uhlmann; Michael Unser (IEEE Trans. Image Process., 2015)

USER-friendly image-based segmentation and analysis of chromosomes. - Virginie Uhlmann; Ricard Delgado-Gonzalo; Michael Unser; Patrik Olavi Michel; Lucia Baldi; Florian Maria Wurm (ISBI, 2016)

CP-CHARM: segmentation-free image classification made accessible. - Virginie Uhlmann; Shantanu Singh; Anne E. Carpenter (BMC Bioinform., 2016)

Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames. - Pedram Pad; Virginie Uhlmann; Michael Unser (IEEE Trans. Image Process., 2016)

Design of Steerable Wavelets to Detect Multifold Junctions. - Zsuzsanna Püspöki; Virginie Uhlmann; Cédric Vonesch; Michael Unser (IEEE Trans. Image Process., 2016)

Hermite Snakes With Control of Tangents. - Virginie Uhlmann; Julien Fageot; Michael Unser (IEEE Trans. Image Process., 2016)

Diverse M-Best Solutions by Dynamic Programming. - Carsten Haubold; Virginie Uhlmann; Michael Unser; Fred A. Hamprecht (GCPR, 2017)

General surface energy for spinal cord and aorta segmentation. - Harshit Gupta; Daniel Schmitter; Virginie Uhlmann; Michael Unser (ISBI, 2017)

Gaussian and Sparse Processes Are Limits of Generalized Poisson Processes. - Julien Fageot; Virginie Uhlmann; Michael Unser (CoRR, 2017)

Multiresolution Subdivision Snakes. - Anais Badoual; Daniel Schmitter; Virginie Uhlmann; Michael Unser (IEEE Trans. Image Process., 2017)

DiversePathsJ: diverse shortest paths for bioimage analysis. - Virginie Uhlmann; Carsten Haubold; Fred A. Hamprecht; Michael Unser (Bioinform., 2018)

A Learning-Based Formulation of Parametric Curve Fitting for Bioimage Analysis. - Soham Mandal; Virginie Uhlmann (ENUMATH, 2019)

Support and approximation properties of Hermite splines. - Julien Fageot; Shayan Aziznejad; Michael Unser; Virginie Uhlmann (J. Comput. Appl. Math., 2020)

Dictionary Learning for Two-Dimensional Kendall Shapes. - Anna Song; Virginie Uhlmann; Julien Fageot; Michael Unser (SIAM J. Imaging Sci., 2020)

Aura-Net: Robust Segmentation Of Phase-Contrast Microscopy Images with Few Annotations. - Ethan Cohen; Virginie Uhlmann (ISBI, 2021)

Splinedist: Automated Cell Segmentation With Spline Curves. - Soham Mandal; Virginie Uhlmann (ISBI, 2021)

Principled Design and Implementation of Steerable Detectors. - Julien Fageot; Virginie Uhlmann; Zsuzsanna Püspöki; Benjamin Beck; Michael Unser; Adrien Depeursinge (IEEE Trans. Image Process., 2021)

Steer'n'Detect: fast 2D template detection with accurate orientation estimation. - Virginie Uhlmann; Zsuzsanna Püspöki; Adrien Depeursinge; Michael Unser; Daniel Sage; Julien Fageot (Bioinform., 2022)

μMatch: 3D Shape Correspondence for Biological Image Data. - James Klatzow; Giovanni Dalmasso; Neus Martínez-Abadías; James Sharpe; Virginie Uhlmann (Frontiers Comput. Sci., 2022)

Editorial: Methods and Tools for Bioimage Analysis. - Florian Levet; Virginie Uhlmann; Florian Jug (Frontiers Comput. Sci., 2022)

A Practical Guide to Supervised Deep Learning for Bioimage Analysis: Challenges and good practices. - Virginie Uhlmann; Laurène Donati; Daniel Sage (IEEE Signal Process. Mag., 2022)

Simulating structurally variable nuclear pore complexes for microscopy. - Maria Theiss; Jean-Karim Hériché; Craig Russell; David Helekal; Alisdair Soppitt; Jonas Ries; Jan Ellenberg; Alvis Brazma; Virginie Uhlmann (Bioinform., 2023)

Noise contrastive estimation with soft targets for conditional models. - Johannes Hugger; Virginie Uhlmann (CoRR, 2024)

ShapeEmbed: a self-supervised learning framework for 2D contour quantification. - Anna Foix Romero; Craig Russell; Alexander Krull; Virginie Uhlmann (CoRR, 2025)