Simulation and study of large-scale bacteria-materials interactions via BioScape enabled by GPUs. - Jie Li 004; Vishakha Sharma 001; Narayan Ganesan; Adriana B. Compagnoni (BCB, 2012)

Parallel BioScape: A Stochastic and Parallel Language for Mobile and Spatial Interactions - Adriana B. Compagnoni; Mariangiola Dezani-Ciancaglini; Paola Giannini; Karin Sauer; Vishakha Sharma 001; Angelo Troina (MeCBIC, 2012)

BioScape: A Modeling and Simulation Language for Bacteria-Materials Interactions. - Adriana B. Compagnoni; Vishakha Sharma 001; Yifei Bao; Matthew Libera; Svetlana Sukhishvili; Philippe Bidinger; Livio Bioglio; Eduardo Bonelli (CS2Bio, 2012)

Simulating Anti-adhesive and Antibacterial Bifunctional Polymers for Surface Coating using BioScape. - Vishakha Sharma 001; Adriana B. Compagnoni; Matthew Libera; Agnieszka K. Muszanska; Henk J. Busscher; Henny C. van der Mei (BCB, 2013)

Computational and mathematical models of the JAK-STAT signal transduction pathway. - Vishakha Sharma 001; Adriana B. Compagnoni (SummerSim, 2013)

A Calculus of Located Entities. - Adriana B. Compagnoni; Paola Giannini; Catherine Kim; Matthew Milideo; Vishakha Sharma 001 (DCM, 2013)

Computational modeling of the effects of counterfeit components. - Vishakha Sharma 001; Adriana B. Compagnoni; Jose Emmanuel Ramirez-Marquez (SummerSim, 2014)

Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms. - Narayan Ganesan; Jie Li 004; Vishakha Sharma 001; Hanyu Jiang; Adriana B. Compagnoni (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)