Genome Informatics. - Anil K. Kesarwani; Ankit Malhotra; Anuj Srivastava; Guruprasad Ananda; Haitham Ashoor; Parveen Kumar; Rupesh K. Kesharwani; Vishal Kumar Sarsani; Yi Li; Joshy George; Krishna M. Karuturi (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data. - Collin Giguere; Harsh Vardhan Dubey; Vishal Kumar Sarsani; Hachem Saddiki; Shai He; Patrick Flaherty (BMC Bioinform., 2020)

Model-based identification of conditionally-essential genes from transposon-insertion sequencing data. - Vishal Kumar Sarsani; Berent Aldikacti; Shai He; Rilee Zeinert; Peter Chien; Patrick Flaherty (PLoS Comput. Biol., 2022)