MotifMap: integrative genome-wide maps of regulatory motif sites for model species. - Kenneth Daily; Vishal R. Patel; Paul Rigor; Xiaohui Xie; Pierre Baldi (BMC Bioinform., 2011)

A Genomic Analysis Pipeline and Its Application to Pediatric Cancers. - Michael Zeller; Christophe N. Magnan; Vishal R. Patel; Paul Rigor; Leonard Sender; Pierre Baldi (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework. - Vishal R. Patel; Nicholas Ceglia; Michael Zeller; Kristin Eckel-Mahan; Paolo Sassone-Corsi; Pierre Baldi (Bioinform., 2015)