A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment. - Sanguthevar Rajasekaran; Vishal Thapar; Hardik Dave; Chun-Hsi Huang (KELSI, 2004)

Exact algorithms for motif search. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang; Vishal Thapar; Michael R. Gryk; Mark W. Maciejewski; Martin R. Schiller (APBC, 2005)

Sampling Based Meta-algorithms for Accurate Multiple Sequence Alignment. - Vishal Thapar; Sanguthevar Rajasekaran (BIBM, 2008)

Efficient sorting algorithms for the cell broadband engine. - Dolly Sharma 001; Vishal Thapar; Reda A. Ammar; Sanguthevar Rajasekaran; Mohamed Ahmed (ISCC, 2008)

Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs. - Vamsi Kundeti; Sanguthevar Rajasekaran; Hieu Dinh; Matthew Vaughn; Vishal Thapar (BMC Bioinform., 2010)