Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling. - Katarzyna A. Rejniak; Shizhen E. Wang; Nicole S. Bryce; Hang Chang; Bahram Parvin; Jerome Jourquin; Lourdes Estrada; Joe W. Gray; Carlos L. Arteaga; Alissa M. Weaver; Vito Quaranta; Alexander R. A. Anderson (PLoS Comput. Biol., 2010)

CellAnimation: an open source MATLAB framework for microscopy assays. - Walter Georgescu; John P. Wikswo; Vito Quaranta (Bioinform., 2012)

Establishment and Validation of Computational Model for MT1-MMP Dependent ECM Degradation and Intervention Strategies. - Daisuke Hoshino; Naohiko Koshikawa; Takashi Suzuki; Vito Quaranta; Alissa M. Weaver; Motoharu Seiki; Kazuhisa Ichikawa (PLoS Comput. Biol., 2012)

Co-expression network analysis identifies Spleen Tyrosine Kinase (SYK) as a candidate oncogenic driver in a subset of small-cell lung cancer. - Akshata R. Udyavar; Megan D. Hoeksema; Jonathan E. Clark; Yong Zou; Zuojian Tang; Zhiguo Li; Ming Li 022; Heidi Chen; Alexander R. Statnikov; Yu Shyr; Daniel C. Liebler; John K. Field; et al. (BMC Syst. Biol., 2013)

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. - David J. Wooten; Sarah M. Groves; Darren R. Tyson; Qi Liu 024; Jing S. Lim; Réka Albert; Carlos F. Lopez; Julien Sage; Vito Quaranta (PLoS Comput. Biol., 2019)

Thunor: visualization and analysis of high-throughput dose-response datasets. - Alexander L. R. Lubbock; Leonard A. Harris; Vito Quaranta; Darren R. Tyson; Carlos F. Lopez (Nucleic Acids Res., 2021)

Identifying mechanisms driving the early response of triple negative breast cancer patients to neoadjuvant chemotherapy using a mechanistic model integrating in vitro and in vivo imaging data. - Guillermo Lorenzo; Angela M. Jarrett; Christian T. Meyer; Vito Quaranta; Darren R. Tyson; Thomas E. Yankeelov (CoRR, 2022)

Unified tumor growth mechanisms from multimodel inference and dataset integration. - Samantha P. Beik; Leonard A. Harris; Michael A. Kochen; Julien Sage; Vito Quaranta; Carlos F. Lopez (PLoS Comput. Biol., 2023)

A global sensitivity analysis of a mechanistic model of neoadjuvant chemotherapy for triple negative breast cancer constrained by in vitro and in vivo imaging data. - Guillermo Lorenzo; Angela M. Jarrett; Christian T. Meyer; Julie C. DiCarlo; John Virostko; Vito Quaranta; Darren R. Tyson; Thomas E. Yankeelov (Eng. Comput., 2024)