Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains. - Nian Wang 003; Robert J. Anderson; David G. Ashbrook; Vivek Gopalakrishnan; Youngser Park; Carey E. Priebe; Yi Qi; Rick Laoprasert; Joshua T. Vogelstein; Robert W. Williams; G. Allan Johnson (NeuroImage, 2020)

Fast Auto-differentiable Digitally Reconstructed Radiographs for Solving Inverse Problems in Intraoperative Imaging. - Vivek Gopalakrishnan; Polina Golland (CLIP@MICCAI, 2022)

Intraoperative 2D/3D Image Registration via Differentiable X-Ray Rendering. - Vivek Gopalakrishnan; Neel Dey; Polina Golland (CVPR, 2024)

Grad-CAMO: Learning Interpretable Single-Cell Morphological Profiles from 3D Cell Painting Images. - Vivek Gopalakrishnan; Jingzhe Ma; Zhiyong Xie (CVPR Workshops, 2024)

Differentiable Voxel-based X-ray Rendering Improves Sparse-View 3D CBCT Reconstruction. - Mohammadhossein Momeni; Vivek Gopalakrishnan; Neel Dey; Polina Golland; Sarah F. Frisken (CoRR, 2024)

VESCL: an open source 2D vessel contouring library. - Sarah F. Frisken; Nazim Haouchine; David Dimitris Chlorogiannis; Vivek Gopalakrishnan; Alexandre Cafaro; William M. Wells III; Alexandra J. Golby; R. Du (Int. J. Comput. Assist. Radiol. Surg., 2024)

Mesoscale Brain Mapping: Bridging Scales and Modalities in Neuroimaging - A Symposium Review. - Joshua K. Marchant; Natalie G. Ferris; Diana Grass; Magdelena S. Allen; Vivek Gopalakrishnan; Mark D. Olchanyi; Devang Sehgal; Maxina Sheft; Amelia Strom; Berkin Bilgic; Brian L. Edlow; Elizabeth M. C. Hillman; et al. (Neuroinformatics, 2024)

Rapid patient-specific neural networks for intraoperative X-ray to volume registration. - Vivek Gopalakrishnan; Neel Dey; David Dimitris Chlorogiannis; Andrew Abumoussa; Anna M. Larson; Darren Orbach; Sarah F. Frisken; Polina Golland (CoRR, 2025)

PolyPose: Localizing Deformable Anatomy in 3D from Sparse 2D X-ray Images using Polyrigid Transforms. - Vivek Gopalakrishnan; Neel Dey; Polina Golland (CoRR, 2025)

Improving automatic cerebral 3D-2D CTA-DSA registration. - Charles Downs; P. Matthijs van der Sluijs; Sandra A. P. Cornelissen; Frank te Nijenhuis; Wim H. van Zwam; Vivek Gopalakrishnan; Xucong Zhang; Ruisheng Su; Theo van Walsum (Int. J. Comput. Assist. Radiol. Surg., 2025)

Spatiotemporally constrained 3D reconstruction from biplanar digital subtraction angiography. - Sarah F. Frisken; Vivek Gopalakrishnan; David Dimitris Chlorogiannis; Nazim Haouchine; Alexandre Cafaro; Alexandra J. Golby; William M. Wells III; Rose Du (Int. J. Comput. Assist. Radiol. Surg., 2025)

DiffUS: Differentiable Ultrasound Rendering from Volumetric Imaging. - Noe Bertramo; Gabriel Duguey; Vivek Gopalakrishnan (CoRR, 2025)