GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. - Anil G. Jegga; Jing Chen 021; Sivakumar Gowrisankar; Mrunal A. Deshmukh; Ranga Chandra Gudivada; Sue Kong; Vivek Kaimal; Bruce J. Aronow (Nucleic Acids Res., 2007)

ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems. - Vivek Kaimal; Eric E. Bardes; Scott C. Tabar; Anil G. Jegga; Bruce J. Aronow (Nucleic Acids Res., 2010)

Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia. - Kazuhiko Bessho; Kumar Shanmukhappa; Rachel Sheridan; Pranavkumar Shivakumar; Reena Mourya; Stephanie Walters; Vivek Kaimal; Eric Dilbone; Anil G. Jegga; Jorge A. Bezerra (BMC Syst. Biol., 2013)