Demixing Calcium Imaging Data in C. elegans via Deformable Non-negative Matrix Factorization. - Amin Nejatbakhsh; Erdem Varol; Eviatar Yemini; Vivek Venkatachalam; Albert Lin; Aravinthan D. T. Samuel; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)

Learning Probabilistic Piecewise Rigid Atlases of Model Organisms via Generative Deep Networks. - Amin Nejatbakhsh; Neel Dey; Vivek Venkatachalam; Eviatar Yemini; Liam Paninski; Erdem Varol (IPMI, 2023)

Versatile multiple object tracking in sparse 2D/3D videos via deformable image registration. - James Ryu; Amin Nejatbakhsh; Mahdi Torkashvand; Sahana Gangadharan; Maedeh Seyedolmohadesin; Jinmahn Kim; Liam Paninski; Vivek Venkatachalam (PLoS Comput. Biol., 2024)