PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data. - Chen Wang 001; Jared Evans; Aditya Bhagwate; Naresh Prodduturi; Vivekananda Sarangi; Mridu Middha; Hugues Sicotte; Peter T. Vedell; Steven N. Hart; Gavin R. Oliver; Jean-Pierre A. Kocher; Matthew J. Maurer; et al. (Bioinform., 2014)

Identification of missing variants by combining multiple analytic pipelines. - Yingxue Ren; Joseph S. Reddy; Cyril Pottier; Vivekananda Sarangi; Shulan Tian; Jason P. Sinnwell; Shannon K. McDonnell; Joanna M. Biernacka; Minerva M. Carrasquillo; Owen A. Ross; Nilüfer Ertekin-Taner; Rosa Rademakers; et al. (BMC Bioinform., 2018)

SCELLECTOR: ranking amplification bias in single cells using shallow sequencing. - Vivekananda Sarangi; Alexandre Jourdon; Taejeong Bae; Arijit Panda; Flora Vaccarino; Alexej Abyzov (BMC Bioinform., 2020)

All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons. - Vivekananda Sarangi; Yeongjun Jang; Milovan Suvakov; Taejeong Bae; Liana Fasching; Shobana Sekar; Livia Tomasini; Jessica Mariani; Flora Vaccarino; Alexej Abyzov (PLoS Comput. Biol., 2022)

Correction: All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons. - Vivekananda Sarangi; Yeongjun Jang; Milovan Suvakov; Taejeong Bae; Liana Fasching; Shobana Sekar; Livia Tomasini; Jessica Mariani; Flora Vaccarino; Alexej Abyzov (PLoS Comput. Biol., 2022)

Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model. - Xue Wang; Vivekananda Sarangi; Daniel P. Wickland; Shaoyu Li; Duan Chen; E. Aubrey Thompson; Garrett Jenkinson; Yan W. Asmann (Expert Syst. Appl., 2025)

Corrigendum to "Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model" [Expert Syst. Appl. 262 (2025) 125632]. - Xue Wang; Vivekananda Sarangi; Daniel P. Wickland; Shaoyu Li; Duan Chen; E. Aubrey Thompson; Garrett Jenkinson; Yan W. Asmann (Expert Syst. Appl., 2025)