Experimental Comparison of Set Intersection Algorithms for Inverted Indexing. - Vladimír Boza (ITAT, 2013)

Fishing in Read Collections: Memory Efficient Indexing for Sequence Assembly. - Vladimír Boza; Jakub Jursa; Brona Brejová; Tomás Vinar (SPIRE, 2015)

GAML: genome assembly by maximum likelihood. - Vladimír Boza; Brona Brejová; Tomás Vinar (Algorithms Mol. Biol., 2015)

DeepNano-blitz: a fast base caller for MinION nanopore sequencers. - Vladimír Boza; Peter Peresíni; Brona Brejová; Tomás Vinar (Bioinform., 2020)

Time-adjusted Analysis Shows Weak Associations Between BCG Vaccination Policy and COVID-19 Disease Progression. - Katarína Bodová; Vladimír Boza; Brona Brejová; Richard Kollár; Katarína Mikusová; Tomás Vinar (ITAT, 2021)

Alternative Base Callers Aid Real-time Analysis of SARS-CoV-2 Sequencing Runs. - Vladimír Boza; Matej Fedor; Kristína Borsová; Viktória Cabanová; Jana Cerníková; Viktória Hodorová; Peter Peresíni; Klára Sládecková; Boris Klempa; Jozef Nosek; Brona Brejová; Tomás Vinar (ITAT, 2021)

Nanopore base calling on the edge. - Peter Peresíni; Vladimír Boza; Brona Brejová; Tomás Vinar (Bioinform., 2021)

Dynamic Pooling Improves Nanopore Base Calling Accuracy. - Vladimír Boza; Peter Peresíni; Brona Brejová; Tomás Vinar (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Precise Nanopore Signal Modeling Improves Unsupervised Single-Molecule Methylation Detection. - Vladimír Boza; Eduard Batmendijn; Peter Peresíni; Viktória Hodorová; Hana Lichancová; Rastislav Rabatin; Brona Brejová; Jozef Nosek; Tomás Vinar (ITAT, 2023)

Fast and Optimal Weight Update for Pruned Large Language Models. - Vladimír Boza (CoRR, 2024)

Fast and Effective Weight Update for Pruned Large Language Models. - Vladimír Boza (Trans. Mach. Learn. Res., 2024)

Merging of Neural Networks. - Martin Pasen; Vladimír Boza (Neural Process. Lett., 2024)

Two Sparse Matrices are Better than One: Sparsifying Neural Networks with Double Sparse Factorization. - Vladimír Boza; Vladimír Macko (ICLR, 2025)

Addition is almost all you need: Compressing neural networks with double binary factorization. - Vladimír Boza; Vladimír Macko (CoRR, 2025)