MHCPEP–a database of MHC-binding peptides: update 1995. - Vladimir Brusic; George B. Rudy; Anthony P. Kyne; Leonard C. Harrison (Nucleic Acids Res., 1996)

Application of Genetic Search in Derivation of Matrix Models of Peptide Binding to MHC Molecules. - Vladimir Brusic; Christian Schönbach; Masafumi Takiguchi; Victor Ciesielski; Leonard C. Harrison (ISMB, 1997)

MHCPEP, a database of MHC-binding peptides: update 1996. - Vladimir Brusic; George B. Rudy; Anthony P. Kyne; Leonard C. Harrison (Nucleic Acids Res., 1997)

MHCWeb: converting a WWW database into a knowledge-based collaborative environment. - Lawrence S. Hon; Neil F. Abernethy; Vladimir Brusic; Jenny Chai; Russ B. Altman (AMIA, 1998)

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network. - Vladimir Brusic; George B. Rudy; G. Honeyman; Jürgen Hammer; Leonard C. Harrison (Bioinform., 1998)

A neural network model approach to the study of human TAP transporter. - Vladimir Brusic; Peter van Endert; John Zeleznikow; Soizic Daniel; Jürgen Hammer; Nikolai Petrovsky (Silico Biol., 1998)

MHCPEP, a database of MHC-binding peptides: update 1997. - Vladimir Brusic; George B. Rudy; Leonard C. Harrison (Nucleic Acids Res., 1998)

Artificial neural network applications in immunology. - Vladimir Brusic; John Zeleznikow (IJCNN, 1999)

Knowledge discovery and data mining in biological databases. - Vladimir Brusic; John Zeleznikow (Knowl. Eng. Rev., 1999)

Data Warehousing in Molecular Biology. - Christian Schönbach; Peter Kowalski-Saunders; Vladimir Brusic (Briefings Bioinform., 2000)

FIMM, a database of functional molecular immunology. - Christian Schönbach; Judice L. Y. Koh; Xin Sheng; Limsoon Wong; Vladimir Brusic (Nucleic Acids Res., 2000)

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. - Vladimir B. Bajic; Seng Hong Seah; Allen Chong; Guanglan Zhang; Judice L. Y. Koh; Vladimir Brusic (Bioinform., 2002)

An Intelligent System for Vertebrate Promoter Recognition. - Vladimir B. Bajic; Allen Chong; Seng Hong Seah; Vladimir Brusic (IEEE Intell. Syst., 2002)

Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. - Vladimir B. Bajic; Suisheng Tang; Hao Han; Vladimir Brusic; Artemis G. Hatzigeorgiou (Informatica (Slovenia), 2002)

FIMM, a database of functional molecular immunology: update 2002. - Christian Schönbach; Judice L. Y. Koh; Darren R. Flower; Limsoon Wong; Vladimir Brusic (Nucleic Acids Res., 2002)

From Informatics to Bioinformatics. - Vladimir B. Bajic; Vladimir Brusic; Jinyan Li 001; See-Kiong Ng; Limsoon Wong (APBC, 2003)

Bioinformatics for Venom and Toxin Sciences. - Paul T. J. Tan; Asif M. Khan; Vladimir Brusic (Briefings Bioinform., 2003)

Bioinformatic strategies for better understanding of immune function. - Nikolai Petrovsky; Christian Schönbach; Vladimir Brusic (Silico Biol., 2003)

From Immunoinformatics to Immunomics. - Vladimir Brusic (J. Bioinform. Comput. Biol., 2003)

Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens. - Kellathur N. Srinivasan; Guanglan Zhang; Asif M. Khan; J. Thomas August; Vladimir Brusic (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach. - Joyce Phui Yee Siew; Asif M. Khan; Paul T. J. Tan; Judice L. Y. Koh; Seng Hong Seah; Chuay Yeng Koo; Siaw Ching Chai; Arunmozhiarasi Armugam; Vladimir Brusic; Kandiah Jeyaseelan (Bioinform., 2004)

ANTIMIC: a database of antimicrobial sequences. - Manisha Brahmachary; S. P. T. Krishnan; Judice L. Y. Koh; Asif M. Khan; Seng Hong Seah; Tin Wee Tan; Vladimir Brusic; Vladimir B. Bajic (Nucleic Acids Res., 2004)

CysView: protein classification based on cysteine pairing patterns. - Johann Lenffer; Paulo Lai; Wafaa El Mejaber; Asif M. Khan; Judice L. Y. Koh; Paul T. J. Tan; Seng Hong Seah; Vladimir Brusic (Nucleic Acids Res., 2004)

Predictive Vaccinology: Optimisation of Predictions Using Support Vector Machine Classifiers. - Ivana Bozic; Guanglan Zhang; Vladimir Brusic (IDEAL, 2005)

Extraction by Example: Induction of Structural Rules for the Analysis of Molecular Sequence Data from Heterogeneous Sources. - Olivo Miotto; Tin Wee Tan; Vladimir Brusic (IDEAL, 2005)

Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm. - Menaka Rajapakse; Lonce L. Wyse; Bertil Schmidt; Vladimir Brusic (IDEAL, 2005)

Neural Models for Predicting Viral Vaccine Targets. - Guanglan Zhang; Asif M. Khan; Kellathur N. Srinivasan; J. Thomas August; Vladimir Brusic (J. Bioinform. Comput. Biol., 2005)

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. - Guanglan Zhang; Asif M. Khan; Kellathur N. Srinivasan; J. Thomas August; Vladimir Brusic (Nucleic Acids Res., 2005)

PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse. - Guanglan Zhang; Kellathur N. Srinivasan; Anitha Veeramani; J. Thomas August; Vladimir Brusic (Nucleic Acids Res., 2005)

Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs. - Menaka Rajapakse; Bertil Schmidt; Vladimir Brusic (EvoWorkshops, 2006)

Functional Prediction of Snake Neurotoxins. - Seng Hong Seah; Chee Keong Kwoh 001; Vladimir Brusic; Meena Kishore Sakharkar; Geok See Ng (ICARCV, 2006)

Extreme Learning Machine for Predicting HLA-Peptide Binding. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong; Guanglan Zhang; Vladimir Brusic (ISNN (2), 2006)

Incremental Maintenance of Biological Databases Using Association Rule Mining. - Kai-Tak Lam; Judice L. Y. Koh; Bharadwaj Veeravalli; Vladimir Brusic (PRIB, 2006)

Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides. - Joo Chuan Tong; Guanglan Zhang; Tin Wee Tan; J. Thomas August; Vladimir Brusic; Shoba Ranganathan (Bioinform., 2006)

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. - Asif M. Khan; A. T. Heiny; Kenneth X. Lee; Kellathur N. Srinivasan; Tin Wee Tan; J. Thomas August; Vladimir Brusic (BMC Bioinform., 2006)

Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification. - Liwen You; Ping Zhang 008; Mikael Bodén; Vladimir Brusic (PRIB, 2007)

The growth of bioinformatics. - Vladimir Brusic (Briefings Bioinform., 2007)

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms. - Menaka Rajapakse; Bertil Schmidt; Feng Lin 002; Vladimir Brusic (BMC Bioinform., 2007)

A Hybrid Model for Prediction of Peptide Binding to MHC Molecules. - Ping Zhang 008; Vladimir Brusic; Kaye E. Basford (ICONIP (1), 2008)

Critical technologies for bioinformatics. - Vladimir Brusic; Shoba Ranganathan (Briefings Bioinform., 2008)

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. - Honghuang Lin; Guanglan Zhang; Songsak Tongchusak; Ellis L. Reinherz; Vladimir Brusic (BMC Bioinform., 2008)

Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. - Olivo Miotto; A. T. Heiny; Tin Wee Tan; J. Thomas August; Vladimir Brusic (BMC Bioinform., 2008)

Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses. - Olivo Miotto; Tin Wee Tan; Vladimir Brusic (BMC Bioinform., 2008)

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. - Guanglan Zhang; Asif M. Khan; Kellathur N. Srinivasan; A. T. Heiny; Kenneth X. Lee; Chee Keong Kwoh 001; J. Thomas August; Vladimir Brusic (BMC Bioinform., 2008)

The ImmunoGrid Simulator: How to Use It. - Francesco Pappalardo 001; Mark D. Halling-Brown; Marzio Pennisi; Ferdinando Chiacchio; Clare Sansom; Adrian J. Shepherd; David S. Moss; Santo Motta; Vladimir Brusic (CIBB, 2009)

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. - Francesco Pappalardo 001; Mark D. Halling-Brown; Nicolas Rapin; Ping Zhang 008; Davide Alemani; Andrew P. J. Emerson; Paola Paci; Patrice Duroux; Marzio Pennisi; Arianna Palladini; Olivo Miotto; Daniel Churchill; et al. (Briefings Bioinform., 2009)

Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes. - Liwen You; Vladimir Brusic; Marcus Gallagher; Mikael Bodén (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

PREDmafa: a system for prediction of peptide binding to several MHC class I molecules in cynomolgus macaques. - Guanglan Zhang; Melisa L. Budde; Jennifer J. Lhost; David H. O'Connor; William H. Hildebrand; Vladimir Brusic (BCB, 2011)

Probe design optimization of HLA microarray: Data cleaning of probe signals from cDNA tiling microarray: Outlier detection, noise reduction, and identification of uninformative probes in HLA typing application. - Esma Dilek; Tanya Zlateva; Guanglan Zhang; Lubomir T. Chitkushev; Jae Young Lee; Vladimir Brusic (BIBM Workshops, 2011)

Visualization tools for presenting and analysis of global landscapes of vaccine targets. - Suresh Kalathur; Vladimir Brusic; Guanglan Zhang; Lubomir T. Chitkushev; Tanya Zlateva (BIBM Workshops, 2011)

A cDNA microarray for rapid and economical identification of HLA profiles of individuals. - Guanglan Zhang; Ellis L. Reinherz; Derin B. Keskin; Vladimir Brusic (BIBM Workshops, 2011)

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments. - David S. DeLuca; Derin B. Keskin; Guang Zhang; Ellis L. Reinherz; Vladimir Brusic (BMC Bioinform., 2011)

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. - Christian Schönbach; Sissades Tongsima; Jonathan H. Chan; Vladimir Brusic; Tin Wee Tan; Shoba Ranganathan (BMC Bioinform., 2012)

Immune System Modeling and Related Pathologies. - Francesco Pappalardo 001; Vladimir Brusic; Holger Fröhlich (Comput. Math. Methods Medicine, 2012)

Biomarkers in Immunology: from Concepts to Applications. - Ping Zhang 008; Lou Chitkushev; Vladimir Brusic; Guanglan Zhang (BCB, 2013)

Landscape of neutralizing assessment of monoclonal antibodies against dengue virus. - Jing Sun; Guanglan Zhang; Lars Rønn Olsen; Ellis L. Reinherz; Vladimir Brusic (BCB, 2013)

Computational vaccinology and the ICoVax 2012 workshop. - Yongqun He; Zhiwei Cao; Anne S. De Groot; Vladimir Brusic; Christian Schönbach; Nikolai Petrovsky (BMC Bioinform., 2013)

Antidote application: an educational system for treatment of common toxin overdose. - Jon Long; Yingyuan Zhang; Lubomir T. Chitkushev; Vladimir Brusic; Guanglan Zhang (BCB, 2014)

HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology. - Guanglan Zhang; Angelika Riemer; Derin B. Keskin; Lou Chitkushev; Ellis L. Reinherz; Vladimir Brusic (Database J. Biol. Databases Curation, 2014)

An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression. - Luke Vandewater; Vladimir Brusic; William J. Wilson; Lance S. Macaulay; Ping Zhang 008 (BMC Bioinform., 2015)

MCVdb: A database for knowledge discovery in Merkel cell polyomavirus with applications in T cell immunology and vaccinology. - Guanglan Zhang; Derin B. Keskin; James A. DeCaprio; Catherine J. Wu; Lou Chitkushev; Vladimir Brusic (BIBM, 2017)

Single Cell Transcriptomics Reveals Summary Patterns Specific for PBMCs and Other Cell Types. - Jingjie Xu; Razin Abdulrauf Shaikh; Vladimir Brusic (BIBM, 2018)

Elemental metabolomics. - Ping Zhang 008; Constantinos A. Georgiou; Vladimir Brusic (Briefings Bioinform., 2018)

Classification of Five Cell Types from PBMC Samples using Single Cell Transcriptomics and Artificial Neural Networks. - Razin Abdulrauf Shaikh; Jiahui Zhong; Minjie Lyu; Sen Lin; Derin B. Keskin; Guanglan Zhang; Lou Chitkushev; Vladimir Brusic (BIBM, 2019)

TANTIGEN 2.0: an online database and analysis platform for tumor T cell antigens. - Guanglan Zhang; Lou Chitkushev; Derin B. Keskin; Vladimir Brusic (BIBM, 2019)

Sensor Networks and Data Management in Healthcare: Emerging Technologies and New Challenges. - Matthew Pike; Nasser Mustafa; Dave Towey; Vladimir Brusic (COMPSAC (1), 2019)

Artificial Neural Network System for Cell Classification using Single Cell RNA Expression. - Xin Lin; Jiahui Zhong; Minjie Lyu; Sen Lin; Derin B. Keskin; Guanglan Zhang; Vladimir Brusic; Lou Chitkushev (BIBM, 2020)

Classification of Single Cell Types During Leukemia Therapy using Artificial Neural Networks. - Minjie Lyu; Milena Radenkovic 001; Derin B. Keskin; Vladimir Brusic (BIBM, 2020)

Single-cell mRNA Profiles in PBMC. - Luning Yang; Yihan Zhang 003; Nenad S. Mitic; Derin B. Keskin; Guanglan Zhang; Lou Chitkushev; Vladimir Brusic (BIBM, 2020)

Prediction of PBMC Cell Types Using scRNAseq Reference Profiles. - Luning Yang; Yihan Zhang 003; Nenad S. Mitic; Derin B. Keskin; Guanglan Zhang; Lou Chitkushev; Vladimir Brusic (BIBM, 2020)

Automation of Gene Expression Profile Analysis in Single Cell Data. - Yihan Zhang 003; Luning Yang; Vladimir Brusic (BIBM, 2020)

Tissue of origin classification from single cell mRNA expression by Artificial Neural Networks. - Bangrui Zheng; Minjie Lyu; Sen Lin; Vladimir Brusic (BIBM, 2020)

Classification of PBMC cell types using scRNAseq, ANN, and incremental learning. - Jiahui Zhong; Razin Abdulrauf Shaikh; Haoguo Wu; Xin Lin; Zhiwei Cao; Lou Chitkushev; Guanglan Zhang; Derin B. Keskin; Vladimir Brusic (BIBM, 2020)

Polyimide-Coated Fibre Bragg Grating (FBG) Sensors for Thermal Mapping of Electric Machine Windings. - Kun Shang; Michael Galea; Vladimir Brusic; Serhiy Korposh; Yaping Zhang (ICTON, 2020)

Correctness of Cell Labels in Public Single Cell Transcriptomics Datasets. - Xin Lin; Minjie Lyu; Yihan Zhang 003; Derin B. Keskin; Lubomir T. Chitkushev; Guanglan Zhang; Vladimir Brusic (BIBM, 2021)

PBMC Cell Classification from Single Cell mRNA Expression by Artificial Neural Networks, Profiles, Gene Markers, and Protein Markers. - Minjie Lyu; Yihan Zhang 003; Luning Yang; Xin Lin; Yilin Li; Huan Jin; Anthony Graham Bellotti; Nenad S. Mitic; Vladimir Brusic (BIBM, 2021)

Classification of Single Cell Types using Small Sets of Expressed Genes: Comparative Analysis of Supervised Machine Learning Methods. - Aleksandar Veljkovic; Mirjana M. Maljkovic; Nenad S. Mitic; Sasa N. Malkov; Minjie Lyu; Xin Lin; Marek T. Michalewicz; Guanglan Zhang; Vladimir Brusic (BIBM, 2021)

Applications of single cell profiles of PBMC: Improvements of cell type classification. - Luning Yang; Yihan Zhang 003; Nenad S. Mitic; Derin B. Keskin; Guanglan Zhang; Lubomir T. Chitkushev; Richard Rankin; Vladimir Brusic (BIBM, 2021)

Multi-Step Optimization of Indoor Localization Accuracy Using Commodity WiFi. - Shuyu Li; Sherif Welsen; Vladimir Brusic (PIMRC, 2021)

TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes. - Guanglan Zhang; Lou Chitkushev; Lars Rønn Olsen; Derin B. Keskin; Vladimir Brusic (BMC Bioinform., 2021)

Ethically Informed Software Process for Smart Health Home. - Xiang Zhang; Matthew Pike; Nasser Mustafa; Vladimir Brusic (CBMS, 2022)

Social Impact of Smart Environments: Software Engineering Perspectives and Challenges. - Stuart McDonald; Dave Towey; Vladimir Brusic (COMPSAC, 2022)

The development of ethically informed standards for intelligent monitoring systems of electric machines. - Kun Shang; Stuart McDonald; Giampaolo Buticchi; Vladimir Brusic (COMPSAC, 2022)

Multi-AP and Test Point Accuracy of the Results in WiFi Indoor Localization. - Shuyu Li; Sherif Welsen; Vladimir Brusic (Sensors, 2022)

A privacy preserving framework for federated learning in smart healthcare systems. - Wenshuo Wang 006; Xu Li; Xiuqin Qiu; Xiang Zhang; Jindong Zhao; Vladimir Brusic (Inf. Process. Manag., 2023)

PREDBL6: a system for predicting C57BL/6 mouse T-cell epitopes. - Zitian Zhen; Yi Zeng; Guancheng Huang; Lou Chitkushev; Vladimir Brusic; Derin B. Keskin; Guanglan Zhang (BIBM, 2024)

Correlation-based feature selection of single cell transcriptomics data from multiple sources. - Nenad S. Mitic; Sasa N. Malkov; Mirjana M. Maljkovic; Aleksandar Veljkovic; Ivan Lj. Cukic; Xin Lin; Minjie Lyu; Vladimir Brusic (J. Big Data, 2025)