Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach. - Marylens Hernández Guía; Abel González Pérez; Vladimir Espinosa Angarica; Ana Tereza Ribeiro de Vasconcelos; Julio Collado-Vides (Silico Biol., 2004)

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes. - Abel D. González; Vladimir Espinosa Angarica; Ana Tereza Ribeiro de Vasconcelos; Ernesto Pérez-Rueda; Julio Collado-Vides (Nucleic Acids Res., 2005)

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. - Abel González Pérez; Vladimir Espinosa Angarica; Ana Tereza Ribeiro de Vasconcelos; Julio Collado-Vides (Nucleic Acids Res., 2007)

Prediction of TF target sites based on atomistic models of protein-DNA complexes. - Vladimir Espinosa Angarica; Abel González Pérez; Ana Tereza Ribeiro de Vasconcelos; Julio Collado-Vides; Bruno Contreras-Moreira (BMC Bioinform., 2008)

ProteinLIPs: a web server for identifying highly polar and poorly packed interfaces in proteins. - Helena García-Cebollada; Alfonso López; Vladimir Espinosa Angarica; Juan José Galano-Frutos; Javier Sancho (Bioinform., 2025)