Covering Points on a Circle with Circular Arcs. - Vladimir Filkov (CCCG, 2000)

Identifying gene regulatory networks from experimental data. - Ting Chen; Vladimir Filkov; Steven Skiena (Parallel Comput., 2001)

Analysis Techniques for Microarray Time-Series Data. - Vladimir Filkov; Steven Skiena; Jizu Zhi (J. Comput. Biol., 2002)

GeneBox: Interactive Visualization of Microarray Data Sets. - Nameeta Y. Shah; Vladimir Filkov; Bernd Hamann; Kenneth I. Joy (METMBS, 2003)

Heterogeneous Data Integration with the Consensus Clustering Formalism. - Vladimir Filkov; Steven Skiena (DILS, 2004)

Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data - Vladimir Filkov; Nameeta Y. Shah (Regulatory Genomics, 2004)

Integrating Microarray Data By Consensus Clustering. - Vladimir Filkov; Steven Skiena (Int. J. Artif. Intell. Tools, 2004)

Methods for Random Modularization of Biological Networks. - Zachary M. Saul; Vladimir Filkov (BIBE, 2006)

A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem. - Zhihong Ding; Vladimir Filkov; Dan Gusfield (J. Comput. Biol., 2006)

Recommending random walks. - Zachary M. Saul; Vladimir Filkov; Premkumar T. Devanbu; Christian Bird (ESEC/SIGSOFT FSE, 2007)

Exploring biological network structure using exponential random graph models. - Zachary M. Saul; Vladimir Filkov (Bioinform., 2007)

Consensus Clustering Algorithms: Comparison and Refinement. - Andrey Goder; Vladimir Filkov (ALENEX, 2008)

Latent social structure in open source projects. - Christian Bird; David S. Pattison; Raissa M. D'Souza; Vladimir Filkov; Premkumar T. Devanbu (SIGSOFT FSE, 2008)

Graphlet Arrival: Modeling and verifying a broad array of network properties - Zachary M. Saul; Soumen Roy; Raissa M. D'Souza; Premkumar T. Devanbu; Vladimir Filkov (CoRR, 2008)

A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast. - Vladimir Filkov; Nameeta Y. Shah (J. Comput. Biol., 2008)

From Architecture to Function (and Back) in Bio-networks. - Vladimir Filkov (BICoB, 2009)

Structure and Dynamics of Research Collaboration in Computer Science. - Christian Bird; Earl T. Barr; Andre Nash; Premkumar T. Devanbu; Vladimir Filkov; Zhendong Su 001 (SDM, 2009)

Fair and balanced?: bias in bug-fix datasets. - Christian Bird; Adrian Bachmann; Eirik Aune; John Duffy; Abraham Bernstein; Vladimir Filkov; Premkumar T. Devanbu (ESEC/SIGSOFT FSE, 2009)

Validity of network analyses in Open Source Projects. - Roozbeh Nia; Christian Bird; Premkumar T. Devanbu; Vladimir Filkov (MSR, 2010)

Ecological inference in empirical software engineering. - Daryl Posnett; Vladimir Filkov; Premkumar T. Devanbu (ASE, 2011)

Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments. - Victor Missirian; Luca Comai; Vladimir Filkov (BMC Bioinform., 2011)

Invited: Identifying mutations from TILLING experiments. - Vladimir Filkov (ICCABS, 2012)

POPE: Pipeline of Parentally-Biased Expression. - Victor Missirian; Isabelle Henry; Luca Comai; Vladimir Filkov (ISBRA, 2012)

MIC check: A correlation tactic for ESE data. - Daryl Posnett; Premkumar T. Devanbu; Vladimir Filkov (MSR, 2012)

Mining Stack Exchange: Expertise Is Evident from Initial Contributions. - Daryl Posnett; Eric Warburg; Premkumar T. Devanbu; Vladimir Filkov (SocialInformatics, 2012)

Measuring the Effect of Social Communications on Individual Working Rhythms: A Case Study of Open Source Software. - Qi Xuan 001; Mohammad Gharehyazie; Premkumar T. Devanbu; Vladimir Filkov (SocialInformatics, 2012)

Dual ecological measures of focus in software development. - Daryl Posnett; Raissa M. D'Souza; Premkumar T. Devanbu; Vladimir Filkov (ICSE, 2013)

Social Activities Rival Patch Submission for Prediction of Developer Initiation in OSS Projects. - Mohammad Gharehyazie; Daryl Posnett; Vladimir Filkov (ICSM, 2013)

Asking for (and about) permissions used by Android apps. - Ryan Stevens; Jonathan Ganz; Vladimir Filkov; Premkumar T. Devanbu; Hao Chen 003 (MSR, 2013)

StackOverflow and GitHub: Associations between Software Development and Crowdsourced Knowledge. - Bogdan Vasilescu; Vladimir Filkov; Alexander Serebrenik (SocialCom, 2013)

Using and Asking: APIs Used in the Android Market and Asked about in StackOverflow. - David Kavaler; Daryl Posnett; Clint Gibler; Hao Chen 003; Premkumar T. Devanbu; Vladimir Filkov (SocInfo, 2013)

Synchrony in Social Groups and Its Benefits. - Qi Xuan 001; Vladimir Filkov (Handbook of Human Computation, 2013)

How social Q&A sites are changing knowledge sharing in open source software communities. - Bogdan Vasilescu; Alexander Serebrenik; Premkumar T. Devanbu; Vladimir Filkov (CSCW, 2014)

Building it together: synchronous development in OSS. - Qi Xuan 001; Vladimir Filkov (ICSE, 2014)

Focus-shifting patterns of OSS developers and their congruence with call graphs. - Qi Xuan 001; Aaron Okano; Premkumar T. Devanbu; Vladimir Filkov (SIGSOFT FSE, 2014)

Converging Work-Talk Patterns in Online Task-Oriented Communities. - Qi Xuan 001; Premkumar T. Devanbu; Vladimir Filkov (CoRR, 2014)

Gender and Tenure Diversity in GitHub Teams. - Bogdan Vasilescu; Daryl Posnett; Baishakhi Ray; Mark G. J. van den Brand; Alexander Serebrenik; Premkumar T. Devanbu; Vladimir Filkov (CHI, 2015)

Assert Use in GitHub Projects. - Casey Casalnuovo; Premkumar T. Devanbu; Abílio Oliveira; Vladimir Filkov; Baishakhi Ray (ICSE (1), 2015)

Perceptions of Diversity on Git Hub: A User Survey. - Bogdan Vasilescu; Vladimir Filkov; Alexander Serebrenik (CHASE@ICSE, 2015)

A Data Set for Social Diversity Studies of GitHub Teams. - Bogdan Vasilescu; Alexander Serebrenik; Vladimir Filkov (MSR, 2015)

Wait for It: Determinants of Pull Request Evaluation Latency on GitHub. - Yue Yu 001; Huaimin Wang; Vladimir Filkov; Premkumar T. Devanbu; Bogdan Vasilescu (MSR, 2015)

Developer onboarding in GitHub: the role of prior social links and language experience. - Casey Casalnuovo; Bogdan Vasilescu; Premkumar T. Devanbu; Vladimir Filkov (ESEC/SIGSOFT FSE, 2015)

Quality and productivity outcomes relating to continuous integration in GitHub. - Bogdan Vasilescu; Yue Yu 001; Huaimin Wang; Premkumar T. Devanbu; Vladimir Filkov (ESEC/SIGSOFT FSE, 2015)

Developer initiation and social interactions in OSS: A case study of the Apache Software Foundation. - Mohammad Gharehyazie; Daryl Posnett; Bogdan Vasilescu; Vladimir Filkov (Empir. Softw. Eng., 2015)

The sky is not the limit: multitasking across GitHub projects. - Bogdan Vasilescu; Kelly Blincoe; Qi Xuan 001; Casey Casalnuovo; Daniela E. Damian; Premkumar T. Devanbu; Vladimir Filkov (ICSE, 2016)

Initial and Eventual Software Quality Relating to Continuous Integration in GitHub. - Yue Yu 001; Bogdan Vasilescu; Huaimin Wang; Vladimir Filkov; Premkumar T. Devanbu (CoRR, 2016)

Perceived language complexity in GitHub issue discussions and their effect on issue resolution. - David Kavaler; Sasha Sirovica; Vincent J. Hellendoorn; Raúl Aranovich; Vladimir Filkov (ASE, 2017)

The impact of continuous integration on other software development practices: a large-scale empirical study. - Yangyang Zhao; Alexander Serebrenik; Yuming Zhou; Vladimir Filkov; Bogdan Vasilescu (ASE, 2017)

Some from here, some from there: cross-project code reuse in GitHub. - Mohammad Gharehyazie; Baishakhi Ray; Vladimir Filkov (MSR, 2017)

A large-scale study of programming languages and code quality in GitHub. - Baishakhi Ray; Daryl Posnett; Premkumar T. Devanbu; Vladimir Filkov (Commun. ACM, 2017)

Tracing distributed collaborative development in apache software foundation projects. - Mohammad Gharehyazie; Vladimir Filkov (Empir. Softw. Eng., 2017)

Stochastic actor-oriented modeling for studying homophily and social influence in OSS projects. - David Kavaler; Vladimir Filkov (Empir. Softw. Eng., 2017)

Reconstructing Gene Networks of Forest Trees from Gene Expression Data: Toward Higher-Resolution Approaches. - Matt Zinkgraf; Andrew Groover; Vladimir Filkov (ICT Innovations, 2018)

Within-ecosystem issue linking: a large-scale study of rails. - Yang Zhang 026; Yue Yu 001; Huaimin Wang; Bogdan Vasilescu; Vladimir Filkov (SoftwareMining@ASE, 2018)

One size does not fit all: an empirical study of containerized continuous deployment workflows. - Yang Zhang 026; Bogdan Vasilescu; Huaimin Wang; Vladimir Filkov (ESEC/SIGSOFT FSE, 2018)

Modern Food Foraging Patterns: Geography and Cuisine Choices of Restaurant Patrons on Yelp. - Qi Xuan 001; Mingming Zhou; Zhiyuan Zhang; Chenbo Fu; Yun Xiang; Zhefu Wu; Vladimir Filkov (IEEE Trans. Comput. Soc. Syst., 2018)

Social Synchrony on Complex Networks. - Qi Xuan 001; Zhiyuan Zhang; Chenbo Fu; Hong-xiang Hu; Vladimir Filkov (IEEE Trans. Cybern., 2018)

Tool choice matters: JavaScript quality assurance tools and usage outcomes in GitHub projects. - David Kavaler; Asher Trockman; Bogdan Vasilescu; Vladimir Filkov (ICSE, 2019)

Socio-technical work-rate increase associates with changes in work patterns in online projects. - Farhana Sarker; Bogdan Vasilescu; Kelly Blincoe; Vladimir Filkov (ICSE, 2019)

Studying Android App Popularity by Cross-Linking GitHub and Google Play Store. - John Businge; Moses Openja; David Kavaler; Engineer Bainomugisha; Foutse Khomh; Vladimir Filkov (SANER, 2019)

A clustering-based approach for mining dockerfile evolutionary trajectories. - Yang Zhang 026; Huaimin Wang; Vladimir Filkov (Sci. China Inf. Sci., 2019)

Rebuttal to Berger et al., TOPLAS 2019. - Baishakhi Ray; Prem Devanbu; Vladimir Filkov (CoRR, 2019)

Cross-project code clones in GitHub. - Mohammad Gharehyazie; Baishakhi Ray; Mehdi Keshani; Masoumeh Soleimani Zavosht; Abbas Heydarnoori; Vladimir Filkov (Empir. Softw. Eng., 2019)

Whom are you going to call? determinants of @-mentions in Github discussions. - David Kavaler; Premkumar T. Devanbu; Vladimir Filkov (Empir. Softw. Eng., 2019)

Software visualization and deep transfer learning for effective software defect prediction. - Jinyin Chen; Keke Hu; Yue Yu 001; Zhuangzhi Chen; Qi Xuan 001; Yi Liu 024; Vladimir Filkov (ICSE, 2020)

Team Discussions and Dynamics During DevOps Tool Adoptions in OSS Projects. - Likang Yin; Vladimir Filkov (ASE, 2020)

Apache Software Foundation Incubator Project Sustainability Dataset. - Likang Yin; Zhiyuan Zhang; Qi Xuan 001; Vladimir Filkov (MSR, 2021)

Beyond NVD: Cybersecurity meets the Semantic Web. - Raúl Aranovich; Muting Wu; Dian Yu 002; Katya Katsy; Benyamin Ahmadnia; Matthew Bishop; Vladimir Filkov; Kenji Sagae (NSPW, 2021)

Sustainability forecasting for Apache incubator projects. - Likang Yin; Zhuangzhi Chen; Qi Xuan 001; Vladimir Filkov (ESEC/SIGSOFT FSE, 2021)

Exploring Apache Incubator Project Trajectories with APEX. - Anirudh Ramchandran; Likang Yin; Vladimir Filkov (MSR, 2022)

Code, quality, and process metrics in graduated and retired ASFI projects. - Stefan Stanciulescu; Likang Yin; Vladimir Filkov (ESEC/SIGSOFT FSE, 2022)

Open Source Software Sustainability: Combining Institutional Analysis and Socio-Technical Networks. - Likang Yin; Mahasweta Chakraborti; Charles M. Schweik; Seth Frey; Vladimir Filkov (CoRR, 2022)

Open Source Software Sustainability: Combining Institutional Analysis and Socio-Technical Networks. - Likang Yin; Mahasweta Chakraborti; Yibo Yan; Charles M. Schweik; Seth Frey; Vladimir Filkov (Proc. ACM Hum. Comput. Interact., 2022)

On the Self-Governance and Episodic Changes in Apache Incubator Projects: An Empirical Study. - Likang Yin; Xiyu Zhang 002; Vladimir Filkov (ICSE, 2023)

GitHub OSS Governance File Dataset. - Yibo Yan; Seth Frey; Amy X. Zhang; Vladimir Filkov; Likang Yin (MSR, 2023)

Do We Run How We Say We Run? Formalization and Practice of Governance in OSS Communities. - Mahasweta Chakraborti; Curtis Atkisson; Stefan Stanciulescu; Vladimir Filkov; Seth Frey (CHI, 2024)

From Models to Practice: Enhancing OSS Project Sustainability with Evidence-Based Advice. - Nafiz Imtiaz Khan; Vladimir Filkov (SIGSOFT FSE Companion, 2024)

EvidenceBot: A Privacy-Preserving, Customizable RAG-Based Tool for Enhancing Large Language Model Interactions. - Nafiz Imtiaz Khan; Vladimir Filkov (SIGSOFT FSE Companion, 2025)