MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes. - Radka Svobodová Vareková; Deepti Jaiswal Kundu; David Sehnal; Crina-Maria Ionescu; Stanislav Geidl; Lukás Pravda; Vladimír Horský; Michaela Wimmerová; Jaroslav Koca (Nucleic Acids Res., 2014)

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank. - David Sehnal; Radka Svobodová Vareková; Lukás Pravda; Crina-Maria Ionescu; Stanislav Geidl; Vladimír Horský; Deepti Jaiswal Kundu; Michaela Wimmerová; Jaroslav Koca (Nucleic Acids Res., 2015)

NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. - Tomás Racek; Jana Pazúriková; Radka Svobodová Vareková; Stanislav Geidl; Ales Krenek; Francesco L. Falginella; Vladimír Horský; Václav Hejret; Jaroslav Koca (J. Cheminformatics, 2016)

ValTrendsDB: bringing Protein Data Bank validation information closer to the user. - Vladimír Horský; Veronika Bendová; Dominik Tousek; Jaroslav Koca; Radka Svobodová Vareková (Bioinform., 2019)

Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. - Tomás Racek; Ondrej Schindler; Dominik Tousek; Vladimír Horský; Karel Berka; Jaroslav Koca; Radka Svobodová Vareková (Nucleic Acids Res., 2020)

2DProts: database of family-wide protein secondary structure diagrams. - Ivana Hutarová Vareková; Jan Hutar; Adam Midlik; Vladimír Horský; Eva Hladká; Radka Svobodová Vareková; Karel Berka (Bioinform., 2021)

Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. - Aliaksei Chareshneu; Adam Midlik; Crina-Maria Ionescu; Alexander S. Rose; Vladimír Horský; Alessio Cantara; Radka Svobodová Vareková; Karel Berka; David Sehnal (Nucleic Acids Res., 2023)