The iRMSD: a local measure of sequence alignment accuracy using structural information. - Fabrice Armougom; Sébastien Moretti; Vladimir Keduas; Cédric Notredame (ISMB (Supplement of Bioinformatics), 2006)

APDB: a web server to evaluate the accuracy of sequence alignments using structural information. - Fabrice Armougom; Olivier Poirot; Sébastien Moretti; Desmond G. Higgins; Phillip Bucher; Vladimir Keduas; Cédric Notredame (Bioinform., 2006)

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. - Fabrice Armougom; Sébastien Moretti; Olivier Poirot; Stéphane Audic; Pierre Dumas; Basile Schaeli; Vladimir Keduas; Cédric Notredame (Nucleic Acids Res., 2006)

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. - Sébastien Moretti; Frédéric Reinier; Olivier Poirot; Fabrice Armougom; Stéphane Audic; Vladimir Keduas; Cédric Notredame (Nucleic Acids Res., 2006)