Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. - Nikolay A. Kolchanov; Oleg V. Vishnevsky; Vladimir N. Babenko; Alexander E. Kel; Ilya N. Shindyalov (ISMB, 1995)

Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential. - Alexander E. Kel; M. Philipenko; Vladimir N. Babenko; Nikolay A. Kolchanov (German Conference on Bioinformatics, 1996)

Combinatorial identification of promoters induced upon immune cell activation. - Alexander E. Kel; Olga V. Kel-Margoulis; Vladimir N. Babenko; Nikolay A. Kolchanov; Edgar Wingender (German Conference on Bioinformatics, 1998)

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Alexander E. Kel; Yury V. Kondrakhin; Anatoly S. Frolov; Fedor A. Kolpakov; T. N. Goryachkovskaya; O. V. Kel; Elena A. Ananko; Elena V. Ignatieva; Olga A. Podkolodnaya; Vladimir N. Babenko; et al. (ISMB, 1998)

A genetic algorithm for designing gene family-specific oligonucleotide sets used for hybridization: the G protein-coupled receptor protein superfamily. - Alexander E. Kel; Andrey A. Ptitsyn; Vladimir N. Babenko; Sebastian Meier-Ewert; Hans Lehrach (Bioinform., 1998)

Investigating extended regulatory regions of genomic DNA sequences. - Vladimir N. Babenko; P. S. Kosarev; Oleg V. Vishnevsky; Victor G. Levitsky; V. V. Basin; Anatoly S. Frolov (Bioinform., 1999)

Computational analysis of mutation spectra. - Igor B. Rogozin; Vladimir N. Babenko; Luciano Milanesi; Youri I. Pavlov (Briefings Bioinform., 2003)

Analysis of evolution of exon-intron structure of eukaryotic genes. - Igor B. Rogozin; Alexander V. Sverdlov; Vladimir N. Babenko; Eugene V. Koonin (Briefings Bioinform., 2005)

Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals. - Vladimir N. Babenko; Anatoly O. Bragin; Anastasia M. Spitsina; Irina V. Chadaeva; Elvira R. Galieva; Galina V. Orlova; Irina V. Medvedeva 001; Yuriy L. Orlov (J. Integr. Bioinform., 2016)

Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events. - Vladimir N. Babenko; Natalya V. Gubanova; Anatoly O. Bragin; Irina V. Chadaeva; Gennady V. Vasiliev; Irina V. Medvedeva 001; Alexey S. Gaytan; Alexey L. Krivoshapkin; Yuriy L. Orlov (J. Integr. Bioinform., 2017)

RNA-Seq Mouse Brain Regions Expression Data Analysis: Focus on ApoE Functional Network. - Vladimir N. Babenko; Dmitry A. Smagin; Natalia N. Kudryavtseva (J. Integr. Bioinform., 2017)

CpG islands' clustering uncovers early development genes in the human genome. - Vladimir N. Babenko; Anton G. Bogomolov; Roman O. Babenko; Elvira R. Galieva; Yuriy L. Orlov (Comput. Sci. Inf. Syst., 2018)