Pathway Enrichment Analysis for Untargeted Metabolomics. - Vladimir Porokhin; Xinmeng Li; Soha Hassoun (BCB, 2017)

Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products. - Vladimir Porokhin; Li-Ping Liu 001; Soha Hassoun (Bioinform., 2023)

Protein-ligand co-design: a case for improving binding affinity between type II NADH:quinone oxidoreductase and quinones. - Vladimir Porokhin; Anne M. Brown; Soha Hassoun (J. Comput. Aided Mol. Des., 2025)