Automated Analysis of Multi Site MRI Phantom Data for the NIHPD Project. - Luke Fu; Vladimir S. Fonov; G. Bruce Pike; Alan C. Evans; D. Louis Collins (MICCAI (2), 2006)

Human Brain Myelination from Birth to 4.5 Years. - Bérengère Aubert-Broche; Vladimir S. Fonov; Ilana Leppert; G. Bruce Pike; D. Louis Collins (MICCAI (2), 2008)

The effect of template choice on morphometric analysis of pediatric brain data. - Uicheul Yoon; Vladimir S. Fonov; Daniel Perusse; Alan C. Evans; Brain Development Cooperative Group (NeuroImage, 2009)

Improved Precision in the Measurement of Longitudinal Global and Regional Volumetric Changes via a Novel MRI Gradient Distortion Characterization and Correction Technique. - Vladimir S. Fonov; Andrew L. Janke; Zografos Caramanos; Douglas L. Arnold; Sridar Narayanan; G. Bruce Pike; D. Louis Collins (MIAR, 2010)

Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (MICCAI (3), 2010)

Non-local MRI upsampling. - José V. Manjón; Pierrick Coupé; Antonio Buades; Vladimir S. Fonov; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2010)

Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change. - Zografos Caramanos; Vladimir S. Fonov; Simon J. Francis; Sridar Narayanan; G. Bruce Pike; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2010)

Corrigendum to "Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change" [NeuroImage 49 (2010) 1601-1611]. - Zografos Caramanos; Vladimir S. Fonov; Simon J. Francis; Sridar Narayanan; G. Bruce Pike; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2010)

Spatial intensity prior correction for tissue segmentation in the developing human brain. - Sun Hyung Kim; Vladimir S. Fonov; Joseph Piven; John H. Gilmore; Clement Vachet; Guido Gerig; D. Louis Collins; Martin Styner (ISBI, 2011)

Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (MICCAI (3), 2011)

Regional brain atrophy in children with multiple sclerosis. - Bérengère Aubert-Broche; Vladimir S. Fonov; R. Ghassemi; Sridar Narayanan; Douglas L. Arnold; Brenda Banwell; John G. Sled; D. Louis Collins (NeuroImage, 2011)

Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (NeuroImage, 2011)

Unbiased average age-appropriate atlases for pediatric studies. - Vladimir S. Fonov; Alan C. Evans; Kelly N. Botteron; C. Robert Almli; Robert C. McKinstry; D. Louis Collins (NeuroImage, 2011)

Atlas-based clustering of sulcal patterns - Application to the left inferior frontal sulcus. - Olivier Coulon; Vladimir S. Fonov; Jean-François Mangin; D. Louis Collins (ISBI, 2012)

A New Framework for Analyzing Structural Volume Changes of Longitudinal Brain MRI Data. - Bérengère Aubert-Broche; Vladimir S. Fonov; Daniel García-Lorenzo; Abderazzak Mouiha; Nicolas Guizard; Pierrick Coupé; Simon F. Eskildsen; D. Louis Collins (STIA, 2012)

Spatio-temporal Regularization for Longitudinal Registration to an Unbiased 3D Individual Template. - Nicolas Guizard; Vladimir S. Fonov; Daniel García-Lorenzo; Bérengère Aubert-Broche; Simon F. Eskildsen; D. Louis Collins (STIA, 2012)

Comparing two approaches to rigid registration of three-dimensional ultrasound and magnetic resonance images for neurosurgery. - Laurence Mercier; Vladimir S. Fonov; Claire Haegelen; Rolando Del Maestro; Kevin Petrecca; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2012)

Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (NeuroImage, 2012)

BEaST: Brain extraction based on nonlocal segmentation technique. - Simon F. Eskildsen; Pierrick Coupé; Vladimir S. Fonov; José V. Manjón; Kelvin K. Leung; Nicolas Guizard; Shafik N. Wassef; Lasse Riis Østergaard; D. Louis Collins (NeuroImage, 2012)

Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease. - Claire Haegelen; Pierrick Coupé; Vladimir S. Fonov; Nicolas Guizard; Pierre Jannin; Xavier Morandi; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2013)

A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood. - Bérengère Aubert-Broche; Vladimir S. Fonov; Daniel García-Lorenzo; Abderazzak Mouiha; Nicolas Guizard; Pierrick Coupé; Simon F. Eskildsen; D. Louis Collins (NeuroImage, 2013)

Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. - Simon F. Eskildsen; Pierrick Coupé; Daniel García-Lorenzo; Vladimir S. Fonov; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2013)

Is It Possible to Differentiate the Impact of Pediatric Monophasic Demyelinating Disorders and Multiple Sclerosis After a First Episode of Demyelination? - Bérengère Aubert-Broche; Vladimir S. Fonov; Katrin Weier; Sridar Narayanan; Douglas L. Arnold; Brenda Banwell; D. Louis Collins (STIA, 2014)

Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. - Vladimir S. Fonov; Arnaud Le Troter; Manuel Taso; Benjamin De Leener; G. Lévêque; M. Benhamou; Michaël Sdika; Habib Benali; Pierre-François Pradat; D. Louis Collins; Virginie Callot; Julien Cohen-Adad (NeuroImage, 2014)

Nonrigid Registration of Ultrasound and MRI Using Contextual Conditioned Mutual Information. - Hassan Rivaz; Zahra Karimaghaloo; Vladimir S. Fonov; D. Louis Collins (IEEE Trans. Medical Imaging, 2014)

Atlas-Guided Transcranial Doppler Ultrasound Examination with a Neuro-Surgical Navigation System: Case Study. - Yiming Xiao; Ian J. Gerard; Vladimir S. Fonov; Dante De Nigris; Catherine Therrien; Bérengère Aubert-Broche; Simon Drouin; Anna Kochanowska; Donatella Tampieri; D. Louis Collins (CLIP@MICCAI, 2015)

Shape index distribution based local surface complexity applied to the human cortex. - Sun Hyung Kim; Vladimir S. Fonov; D. Louis Collins; Guido Gerig; Martin Andreas Styner (Image Processing, 2015)

Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease. - Yiming Xiao; Vladimir S. Fonov; Silvain Bériault; Ian Gerard; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Multi-contrast unbiased MRI atlas of a Parkinson's disease population. - Yiming Xiao; Vladimir S. Fonov; Silvain Bériault; Fahd Al Subaie; M. Mallar Chakravarty; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge. - Esther E. Bron; Marion Smits; Wiesje M. van der Flier; Hugo Vrenken; Frederik Barkhof; Philip Scheltens; Janne M. Papma; Rebecca M. E. Steketee; Carolina Méndez Orellana; Rozanna Meijboom; Madalena Pinto; Joana R. Meireles; et al. (NeuroImage, 2015)

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. - David M. Cash; Chris Frost 001; Leonardo O. Iheme; Devrim Ünay; Melek Kandemir; Jurgen Fripp; Olivier Salvado; Pierrick Bourgeat; Martin Reuter 001; Bruce Fischl; Marco Lorenzi; Giovanni B. Frisoni; et al. (NeuroImage, 2015)

Cyberinfrastructure for Open Science at the Montreal Neurological Institute. - Samir Das; Tristan Glatard; Christine Rogers; John Saigle; Santiago Paiva; Leigh C. MacIntyre; Mouna Safi-Harb; Marc-Etienne Rousseau; Jordan Stirling; Najmeh Khalili-Mahani; Dave MacFarlane; Penelope Kostopoulos; et al. (Frontiers Neuroinformatics, 2016)

VoxelStats: A MATLAB Package for Multi-Modal Voxel-Wise Brain Image Analysis. - Sulantha Mathotaarachchi; Seqian Wang; Monica Shin; Tharick A. Pascoal; Andréa L. Benedet; Min Su Kang; Thomas Beaudry; Vladimir S. Fonov; Serge Gauthier; Aurélie Labbe; Pedro Rosa-Neto (Frontiers Neuroinformatics, 2016)

MINC 2.0: A Flexible Format for Multi-Modal Images. - Robert D. Vincent; Peter Neelin; Najmeh Khalili-Mahani; Andrew L. Janke; Vladimir S. Fonov; Steven M. Robbins; Leila Baghdadi; Jason P. Lerch; John G. Sled; Reza Adalat; David MacDonald; Alex P. Zijdenbos; et al. (Frontiers Neuroinformatics, 2016)

Development of cortical shape in the human brain from 6 to 24 months of age via a novel measure of shape complexity. - Sun Hyung Kim; Ilwoo Lyu; Vladimir S. Fonov; Clement Vachet; Heather Cody Hazlett; Rachel Gimpel Smith; Joseph Piven; Stephen Dager; Robert C. McKinstry; John R. Pruett Jr.; Alan C. Evans; D. Louis Collins; et al. (NeuroImage, 2016)

Towards Automatic Collateral Circulation Score Evaluation in Ischemic Stroke Using Image Decompositions and Support Vector Machines. - Yiming Xiao; Ali Alamer; Vladimir S. Fonov; Benjamin W. Y. Lo; Donatella Tampieri; D. Louis Collins; Hassan Rivaz; Marta Kersten-Oertel (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Performance comparison of 10 different classification techniques in segmenting white matter hyperintensities in aging. - Mahsa Dadar; Josefina Maranzano; Karen Misquitta; Cassandra J. Anor; Vladimir S. Fonov; Maria Carmela Tartaglia; Owen T. Carmichael; Charles DeCarli; D. Louis Collins; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2017)

SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. - Benjamin De Leener; Simon Lévy; Sara M. Dupont; Vladimir S. Fonov; Nikola Stikov; D. Louis Collins; Virginie Callot; Julien Cohen-Adad (NeuroImage, 2017)

CERES: A new cerebellum lobule segmentation method. - José E. Romero; Pierrick Coupé; Rémi Giraud; Vinh-Thong Ta 002; Vladimir S. Fonov; Min Tae M. Park; M. Mallar Chakravarty; Aristotle N. Voineskos; José V. Manjón (NeuroImage, 2017)

A comparison of accurate automatic hippocampal segmentation methods. - Azar Zandifar; Vladimir S. Fonov; Pierrick Coupé; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2017)

Validation of a Regression Technique for Segmentation of White Matter Hyperintensities in Alzheimer's Disease. - Mahsa Dadar; Tharick A. Pascoal; Sarinporn Manitsirikul; Karen Misquitta; Vladimir S. Fonov; Maria Carmela Tartaglia; John Breitner; Pedro Rosa-Neto; Owen T. Carmichael; Charles DeCarli; D. Louis Collins (IEEE Trans. Medical Imaging, 2017)

A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images. - Mahmoud Mostapha; Mark D. Shen; Sun Hyung Kim; Meghan R. Swanson; D. Louis Collins; Vladimir S. Fonov; Guido Gerig; Joseph Piven; Martin A. Styner (Image Processing, 2018)

An augmented-reality system prototype for guiding transcranial Doppler ultrasound examination. - Yiming Xiao; Simon Drouin; Ian J. Gerard; Vladimir S. Fonov; Bérengère Aubert-Broche; Yuhan Ma; Marta Kersten-Oertel; Donatella Tampieri; D. Louis Collins (Multim. Tools Appl., 2018)

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. - Aaron Carass; Jennifer L. Cuzzocreo; Shuo Han 001; Carlos R. Hernandez-Castillo; Paul E. Rasser; Melanie Ganz; Vincent Beliveau; Jose Dolz; Ismail Ben Ayed; Christian Desrosiers; Benjamin Thyreau; José E. Romero; et al. (NeuroImage, 2018)

A comparison of publicly available linear MRI stereotaxic registration techniques. - Mahsa Dadar; Vladimir S. Fonov; D. Louis Collins; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2018)

PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. - Benjamin De Leener; Vladimir S. Fonov; D. Louis Collins; Virginie Callot; Nikola Stikov; Julien Cohen-Adad (NeuroImage, 2018)

The EADC-ADNI harmonized protocol for hippocampal segmentation: A validation study. - Azar Zandifar; Vladimir S. Fonov; Jens C. Pruessner; D. Louis Collins; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2018)

Developmental trajectories of neuroanatomical alterations associated with the 16p11.2 Copy Number Variations. - Alonso Cárdenas-de-la-Parra; Sandra Martin-Brevet; Clara Moreau; Borja Rodríguez-Herreros; Vladimir S. Fonov; Anne M. Maillard; Nicole R. Zürcher (NeuroImage, 2019)

Cortical and subcortical T1 white/gray contrast, chronological age, and cognitive performance. - John D. Lewis; Vladimir S. Fonov; D. Louis Collins; Alan C. Evans; Jussi Tohka (NeuroImage, 2019)

Unbiased age-specific structural brain atlases for Chinese pediatric population. - Tengda Zhao; Xu-Hong Liao; Vladimir S. Fonov; Qiushi Wang; Weiwei Men; Yanpei Wang; Shaozheng Qin; Shuping Tan; Jia-Hong Gao 001; Alan C. Evans; Sha Tao; Qi Dong; et al. (NeuroImage, 2019)

Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge. - Li Wang 026; Dong Nie; Guannan Li; Élodie Puybareau; Jose Dolz; Qian Zhang 066; Fan Wang 023; Jing Xia; Zhengwang Wu; Jiawei Chen 001; Kim-Han Thung; Toan Duc Bui; et al. (IEEE Trans. Medical Imaging, 2019)

Brain volume loss in individuals over time: Source of variance and limits of detectability. - Sridar Narayanan; Kunio Nakamura; Vladimir S. Fonov; Josefina Maranzano; Zografos Caramanos; Paul S. Giacomini; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2020)

3D MRI Brain Tumour Segmentation with Autoencoder Regularization and Hausdorff Distance Loss Function. - Vladimir S. Fonov; Pedro Rosa-Neto; D. Louis Collins (BrainLes@MICCAI (1), 2021)

DARQ: Deep learning of quality control for stereotaxic registration of human brain MRI to the T1w MNI-ICBM 152 template. - Vladimir S. Fonov; Mahsa Dadar; D. Louis Collins (NeuroImage, 2022)