DistanceScan: a tool for promoter modeling. - Vladimir Shelest; Daniela Albrecht; Ekaterina Shelest (Bioinform., 2010)

SiTaR: a novel tool for transcription factor binding site prediction. - Eugen Fazius; Vladimir Shelest; Ekaterina Shelest (Bioinform., 2011)

Motif-Based Method for the Genome-Wide Prediction of Eukaryotic Gene Clusters. - Thomas Wolf 001; Vladimir Shelest; Ekaterina Shelest (ICIAP Workshops, 2013)

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes. - Thomas Wolf 001; Vladimir Shelest; Neetika Nath; Ekaterina Shelest (Bioinform., 2016)